Results 1 - 20 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24739 | 3' | -50.5 | NC_005264.1 | + | 109606 | 0.66 | 0.996562 |
Target: 5'- --cGGGgCACGGAaagcaAAUGGCGUgGGCGg -3' miRNA: 3'- ugaUUCgGUGUCU-----UUGCUGUAgCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 52168 | 0.66 | 0.994502 |
Target: 5'- cGCUcu-CUACuGGAAACGACggCGGCGa -3' miRNA: 3'- -UGAuucGGUG-UCUUUGCUGuaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 102102 | 0.66 | 0.994502 |
Target: 5'- --cGAGUCugAG-GACGGCuggCGGCGg -3' miRNA: 3'- ugaUUCGGugUCuUUGCUGua-GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 56878 | 0.66 | 0.994502 |
Target: 5'- gGCUAGGCCACugucgaagaccgGGAAcuggGCGAgCAUUauggGGCGg -3' miRNA: 3'- -UGAUUCGGUG------------UCUU----UGCU-GUAG----CCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 112544 | 0.66 | 0.993626 |
Target: 5'- aGCUucaccGGCCGCcGAAAUagGGCGUUGGUGa -3' miRNA: 3'- -UGAu----UCGGUGuCUUUG--CUGUAGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 45543 | 0.66 | 0.993626 |
Target: 5'- ----cGCaCGCGGAGAgCGGCAUCGcGCa -3' miRNA: 3'- ugauuCG-GUGUCUUU-GCUGUAGC-CGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 110207 | 0.66 | 0.993626 |
Target: 5'- cCUAA-CgGCAGggGCGGCAcgGGCGg -3' miRNA: 3'- uGAUUcGgUGUCuuUGCUGUagCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 9934 | 0.66 | 0.993626 |
Target: 5'- cGCUAGGUUcgaaGCAGAGACGc---CGGCGa -3' miRNA: 3'- -UGAUUCGG----UGUCUUUGCuguaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 128960 | 0.66 | 0.993626 |
Target: 5'- cGCUAGGUUcgaaGCAGAGACGc---CGGCGa -3' miRNA: 3'- -UGAUUCGG----UGUCUUUGCuguaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 4262 | 0.66 | 0.995277 |
Target: 5'- gGCUu-GCCgcGCGGGAACcGCGgggCGGCGg -3' miRNA: 3'- -UGAuuCGG--UGUCUUUGcUGUa--GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 8005 | 0.66 | 0.995277 |
Target: 5'- uGCgGGGCCgGCAGAGGCGcccgccACGaCGGCGc -3' miRNA: 3'- -UGaUUCGG-UGUCUUUGC------UGUaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 8209 | 0.66 | 0.995277 |
Target: 5'- --gGGGaCACGGAGACGcggcCAUCGGCc -3' miRNA: 3'- ugaUUCgGUGUCUUUGCu---GUAGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 104482 | 0.66 | 0.996562 |
Target: 5'- cGCgccGGCCccgcCAGAGuACGACAggGGCGa -3' miRNA: 3'- -UGau-UCGGu---GUCUU-UGCUGUagCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 162817 | 0.66 | 0.996562 |
Target: 5'- aGCUAgGGCCGCGGcguuAUGGCGUgcCGGUGc -3' miRNA: 3'- -UGAU-UCGGUGUCuu--UGCUGUA--GCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 151896 | 0.66 | 0.995961 |
Target: 5'- aGCUGuauGUgGCGGAGGgGACggCGGCu -3' miRNA: 3'- -UGAUu--CGgUGUCUUUgCUGuaGCCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 2891 | 0.66 | 0.995961 |
Target: 5'- cGCggcGCgGCGGGGAgGGCGaCGGCGa -3' miRNA: 3'- -UGauuCGgUGUCUUUgCUGUaGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 130008 | 0.66 | 0.995961 |
Target: 5'- uUUAGGCUACAGAccggAACGGCGccgcaGGCu -3' miRNA: 3'- uGAUUCGGUGUCU----UUGCUGUag---CCGc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 53096 | 0.66 | 0.995961 |
Target: 5'- uCUAAGCUGguGGAcaaGGCGcUCGGCGa -3' miRNA: 3'- uGAUUCGGUguCUUug-CUGU-AGCCGC- -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 7882 | 0.66 | 0.995961 |
Target: 5'- ----nGCCcCAGAuGCGGCGUCGGa- -3' miRNA: 3'- ugauuCGGuGUCUuUGCUGUAGCCgc -5' |
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24739 | 3' | -50.5 | NC_005264.1 | + | 90650 | 0.66 | 0.995277 |
Target: 5'- --aGGGCgCGCGGAGACcGCAUugcUGGCGg -3' miRNA: 3'- ugaUUCG-GUGUCUUUGcUGUA---GCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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