miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 5' -56.8 NC_005264.1 + 128757 0.66 0.902194
Target:  5'- cACGUgGAagUCCUUcgCGCCAgugcGCGGCUu -3'
miRNA:   3'- cUGCAgCUaaAGGAG--GCGGU----CGCCGA- -5'
24739 5' -56.8 NC_005264.1 + 43661 0.66 0.902194
Target:  5'- aGGCGUUGGccgcugaaccgUUCUUUggUGCCGGCGGCa -3'
miRNA:   3'- -CUGCAGCUa----------AAGGAG--GCGGUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 70122 0.66 0.899666
Target:  5'- aGGCGUCccuGGUUUCCcucaacgugcuugCUGCCgcGGCGGCg -3'
miRNA:   3'- -CUGCAG---CUAAAGGa------------GGCGG--UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 68229 0.66 0.895808
Target:  5'- uGACGUa----UCCg-CGCCGGCGGCg -3'
miRNA:   3'- -CUGCAgcuaaAGGagGCGGUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 33871 0.66 0.889196
Target:  5'- aACGUgGAg--CgUCCGCUcgaGGCGGCg -3'
miRNA:   3'- cUGCAgCUaaaGgAGGCGG---UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 75451 0.66 0.882361
Target:  5'- uGAUGUUGAUggCCccaaagUCCGCCuggGGUGGCc -3'
miRNA:   3'- -CUGCAGCUAaaGG------AGGCGG---UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 58462 0.66 0.876023
Target:  5'- uGGCGUCGAUcucgucugggaacgCCUgacggucggcCCGCCugAGCGGCa -3'
miRNA:   3'- -CUGCAGCUAaa------------GGA----------GGCGG--UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 116208 0.66 0.875308
Target:  5'- gGAUGcCGAaUUCUUCgGCCAcGCGGUc -3'
miRNA:   3'- -CUGCaGCUaAAGGAGgCGGU-CGCCGa -5'
24739 5' -56.8 NC_005264.1 + 122375 0.66 0.868042
Target:  5'- uGGCGagGGUcuUUCgCUCCGCUccgucugggGGCGGCg -3'
miRNA:   3'- -CUGCagCUA--AAG-GAGGCGG---------UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 93779 0.66 0.868042
Target:  5'- cGACGaCGAUgaCCUgC-CCGGCGGCc -3'
miRNA:   3'- -CUGCaGCUAaaGGAgGcGGUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 13256 0.66 0.868042
Target:  5'- cGGCaUCGAgcagccccCCUCCGCCcGgGGCUg -3'
miRNA:   3'- -CUGcAGCUaaa-----GGAGGCGGuCgCCGA- -5'
24739 5' -56.8 NC_005264.1 + 55452 0.66 0.868042
Target:  5'- gGugGUCGAUUcgUCCUCauCGUCGGCGa-- -3'
miRNA:   3'- -CugCAGCUAA--AGGAG--GCGGUCGCcga -5'
24739 5' -56.8 NC_005264.1 + 3348 0.66 0.868042
Target:  5'- uGGCGagGGUcuUUCgCUCCGCUccgucugggGGCGGCg -3'
miRNA:   3'- -CUGCagCUA--AAG-GAGGCGG---------UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 88334 0.67 0.860566
Target:  5'- cGAUGUCGAUcagCCUggCCGCCuuUGGCg -3'
miRNA:   3'- -CUGCAGCUAaa-GGA--GGCGGucGCCGa -5'
24739 5' -56.8 NC_005264.1 + 7339 0.67 0.860566
Target:  5'- cGCGUCuucgUCCUCCGCCucgucagacuCGGCUa -3'
miRNA:   3'- cUGCAGcuaaAGGAGGCGGuc--------GCCGA- -5'
24739 5' -56.8 NC_005264.1 + 126366 0.67 0.860566
Target:  5'- cGCGUCuucgUCCUCCGCCucgucagacuCGGCUa -3'
miRNA:   3'- cUGCAGcuaaAGGAGGCGGuc--------GCCGA- -5'
24739 5' -56.8 NC_005264.1 + 143041 0.67 0.852889
Target:  5'- uACGUCGAcgcaUUUCUUgCgGgCAGCGGCa -3'
miRNA:   3'- cUGCAGCU----AAAGGA-GgCgGUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 91009 0.67 0.845015
Target:  5'- cGCGUCGuuaUUCgCgaccCCGCgGGCGGCUu -3'
miRNA:   3'- cUGCAGCua-AAG-Ga---GGCGgUCGCCGA- -5'
24739 5' -56.8 NC_005264.1 + 59708 0.67 0.83695
Target:  5'- cGGCGUCGGUUaUCUCCGgCGcGCauGGCUc -3'
miRNA:   3'- -CUGCAGCUAAaGGAGGCgGU-CG--CCGA- -5'
24739 5' -56.8 NC_005264.1 + 91290 0.67 0.83695
Target:  5'- gGAUGUgcaCGAg---CUCCGCCAGCaGGCg -3'
miRNA:   3'- -CUGCA---GCUaaagGAGGCGGUCG-CCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.