miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24740 3' -56.6 NC_005264.1 + 146088 1.11 0.002406
Target:  5'- gGGACCUCGCUACCGUGAGGCACGUCGa -3'
miRNA:   3'- -CCUGGAGCGAUGGCACUCCGUGCAGC- -5'
24740 3' -56.6 NC_005264.1 + 104419 0.74 0.52702
Target:  5'- aGACCUguucuucagCGCUACCGUGGGGgGCGa-- -3'
miRNA:   3'- cCUGGA---------GCGAUGGCACUCCgUGCagc -5'
24740 3' -56.6 NC_005264.1 + 162250 0.73 0.546409
Target:  5'- -cGCCUCGCUGCCGgagucGGGCGaGUCGu -3'
miRNA:   3'- ccUGGAGCGAUGGCac---UCCGUgCAGC- -5'
24740 3' -56.6 NC_005264.1 + 84957 0.71 0.655713
Target:  5'- gGGugCUCGCUugCGgccAGGCugcugcguuaGCGUCGu -3'
miRNA:   3'- -CCugGAGCGAugGCac-UCCG----------UGCAGC- -5'
24740 3' -56.6 NC_005264.1 + 69262 0.7 0.715008
Target:  5'- -cGCCUcaucCGCUGCCaUGGGGCGCG-CGa -3'
miRNA:   3'- ccUGGA----GCGAUGGcACUCCGUGCaGC- -5'
24740 3' -56.6 NC_005264.1 + 34120 0.7 0.715008
Target:  5'- uGGCCuUCGCUGCCucugGUGAcgGGCGCGUa- -3'
miRNA:   3'- cCUGG-AGCGAUGG----CACU--CCGUGCAgc -5'
24740 3' -56.6 NC_005264.1 + 131660 0.7 0.724703
Target:  5'- cGGugCcCGCcgccagACCGuUGGcGGCACGUCGg -3'
miRNA:   3'- -CCugGaGCGa-----UGGC-ACU-CCGUGCAGC- -5'
24740 3' -56.6 NC_005264.1 + 100205 0.69 0.771864
Target:  5'- cGACUUCGCUGagcuCCGcGGGGCGCaGUUGc -3'
miRNA:   3'- cCUGGAGCGAU----GGCaCUCCGUG-CAGC- -5'
24740 3' -56.6 NC_005264.1 + 151847 0.69 0.780973
Target:  5'- gGGGCCgcCGCUccggcggcgACaCGUGGGGgGCGUCu -3'
miRNA:   3'- -CCUGGa-GCGA---------UG-GCACUCCgUGCAGc -5'
24740 3' -56.6 NC_005264.1 + 83116 0.69 0.780973
Target:  5'- -cGCCgacgggCGCcaagGCCGcgGAGGCGCGUCu -3'
miRNA:   3'- ccUGGa-----GCGa---UGGCa-CUCCGUGCAGc -5'
24740 3' -56.6 NC_005264.1 + 101331 0.69 0.786378
Target:  5'- uGGAUauacgCGCggcgcuagccgagACCGcGGGGCGCGUCGg -3'
miRNA:   3'- -CCUGga---GCGa------------UGGCaCUCCGUGCAGC- -5'
24740 3' -56.6 NC_005264.1 + 48363 0.69 0.789955
Target:  5'- cGGCCUCGUUGCgcagugccgCGUcGAGGCGC-UCGa -3'
miRNA:   3'- cCUGGAGCGAUG---------GCA-CUCCGUGcAGC- -5'
24740 3' -56.6 NC_005264.1 + 113684 0.68 0.816051
Target:  5'- -uGCCgcgGCcGCUGUGGGGCAUGUCu -3'
miRNA:   3'- ccUGGag-CGaUGGCACUCCGUGCAGc -5'
24740 3' -56.6 NC_005264.1 + 132351 0.68 0.832664
Target:  5'- uGGCCUCGCUACCu----GUACGUCa -3'
miRNA:   3'- cCUGGAGCGAUGGcacucCGUGCAGc -5'
24740 3' -56.6 NC_005264.1 + 122777 0.68 0.840712
Target:  5'- gGGGCCUC-UUGCCGccGGGGCGCugcgggcccuugGUCGa -3'
miRNA:   3'- -CCUGGAGcGAUGGCa-CUCCGUG------------CAGC- -5'
24740 3' -56.6 NC_005264.1 + 3751 0.68 0.840712
Target:  5'- gGGGCCUC-UUGCCGccGGGGCGCugcgggcccuugGUCGa -3'
miRNA:   3'- -CCUGGAGcGAUGGCa-CUCCGUG------------CAGC- -5'
24740 3' -56.6 NC_005264.1 + 131448 0.68 0.856259
Target:  5'- cGGCC-CGCUACgUGcuugGAGGCGCGgugCGg -3'
miRNA:   3'- cCUGGaGCGAUG-GCa---CUCCGUGCa--GC- -5'
24740 3' -56.6 NC_005264.1 + 12421 0.68 0.856259
Target:  5'- cGGCC-CGCUACgUGcuugGAGGCGCGgugCGg -3'
miRNA:   3'- cCUGGaGCGAUG-GCa---CUCCGUGCa--GC- -5'
24740 3' -56.6 NC_005264.1 + 159082 0.68 0.856259
Target:  5'- aGGaaGCCUUGCguccGCCGUGAagccGGCgaucgcgagACGUCGg -3'
miRNA:   3'- -CC--UGGAGCGa---UGGCACU----CCG---------UGCAGC- -5'
24740 3' -56.6 NC_005264.1 + 146813 0.68 0.856259
Target:  5'- --cCCUCGaCUGCaCG-GAGGCGCGgCGg -3'
miRNA:   3'- ccuGGAGC-GAUG-GCaCUCCGUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.