miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24740 3' -56.6 NC_005264.1 + 3751 0.68 0.840712
Target:  5'- gGGGCCUC-UUGCCGccGGGGCGCugcgggcccuugGUCGa -3'
miRNA:   3'- -CCUGGAGcGAUGGCa-CUCCGUG------------CAGC- -5'
24740 3' -56.6 NC_005264.1 + 6144 0.67 0.894245
Target:  5'- aGGGCCgcgCGCccgucgcgcaucgcgUGCacgauGUGGGGCACGcCGg -3'
miRNA:   3'- -CCUGGa--GCG---------------AUGg----CACUCCGUGCaGC- -5'
24740 3' -56.6 NC_005264.1 + 8358 0.67 0.870312
Target:  5'- cGACCgUCGCUgaugcuuaccggcGCCG-GAcgcGGCGCGUUGa -3'
miRNA:   3'- cCUGG-AGCGA-------------UGGCaCU---CCGUGCAGC- -5'
24740 3' -56.6 NC_005264.1 + 12421 0.68 0.856259
Target:  5'- cGGCC-CGCUACgUGcuugGAGGCGCGgugCGg -3'
miRNA:   3'- cCUGGaGCGAUG-GCa---CUCCGUGCa--GC- -5'
24740 3' -56.6 NC_005264.1 + 19229 0.66 0.92161
Target:  5'- aGGGCCggcagUUGCUACgugccaCGUGAaaGGUACGUCc -3'
miRNA:   3'- -CCUGG-----AGCGAUG------GCACU--CCGUGCAGc -5'
24740 3' -56.6 NC_005264.1 + 19941 0.67 0.863745
Target:  5'- aGGACgcaUCGUcGCCGUGAuggagaaaGGCGCGgcgCGa -3'
miRNA:   3'- -CCUGg--AGCGaUGGCACU--------CCGUGCa--GC- -5'
24740 3' -56.6 NC_005264.1 + 34120 0.7 0.715008
Target:  5'- uGGCCuUCGCUGCCucugGUGAcgGGCGCGUa- -3'
miRNA:   3'- cCUGG-AGCGAUGG----CACU--CCGUGCAgc -5'
24740 3' -56.6 NC_005264.1 + 47210 0.66 0.898083
Target:  5'- gGGGCCaCG--GCCGUcGAuGGCugGUCGg -3'
miRNA:   3'- -CCUGGaGCgaUGGCA-CU-CCGugCAGC- -5'
24740 3' -56.6 NC_005264.1 + 48363 0.69 0.789955
Target:  5'- cGGCCUCGUUGCgcagugccgCGUcGAGGCGC-UCGa -3'
miRNA:   3'- cCUGGAGCGAUG---------GCA-CUCCGUGcAGC- -5'
24740 3' -56.6 NC_005264.1 + 52180 0.66 0.926924
Target:  5'- cGGCgCUCcugauaaauguGCUgaggGCCGUGGGGCGCGguggCGc -3'
miRNA:   3'- cCUG-GAG-----------CGA----UGGCACUCCGUGCa---GC- -5'
24740 3' -56.6 NC_005264.1 + 54600 0.66 0.916067
Target:  5'- uGGAgCUUgaGCUAgUGUcGGGCACGUCc -3'
miRNA:   3'- -CCUgGAG--CGAUgGCAcUCCGUGCAGc -5'
24740 3' -56.6 NC_005264.1 + 58131 0.66 0.916067
Target:  5'- cGACCUCGCgcaGCCGUcuGGUGCuccGUCa -3'
miRNA:   3'- cCUGGAGCGa--UGGCAcuCCGUG---CAGc -5'
24740 3' -56.6 NC_005264.1 + 60529 0.66 0.898083
Target:  5'- -aACCUaCGCaUGCCGgccGAGGUGuCGUCGa -3'
miRNA:   3'- ccUGGA-GCG-AUGGCa--CUCCGU-GCAGC- -5'
24740 3' -56.6 NC_005264.1 + 69262 0.7 0.715008
Target:  5'- -cGCCUcaucCGCUGCCaUGGGGCGCG-CGa -3'
miRNA:   3'- ccUGGA----GCGAUGGcACUCCGUGCaGC- -5'
24740 3' -56.6 NC_005264.1 + 70144 0.67 0.871031
Target:  5'- cGugCUUGCUGCCGcGGcGGCGCcUCa -3'
miRNA:   3'- cCugGAGCGAUGGCaCU-CCGUGcAGc -5'
24740 3' -56.6 NC_005264.1 + 82457 0.66 0.904302
Target:  5'- gGGGCCUCGUU------GGGUACGUCGa -3'
miRNA:   3'- -CCUGGAGCGAuggcacUCCGUGCAGC- -5'
24740 3' -56.6 NC_005264.1 + 83116 0.69 0.780973
Target:  5'- -cGCCgacgggCGCcaagGCCGcgGAGGCGCGUCu -3'
miRNA:   3'- ccUGGa-----GCGa---UGGCa-CUCCGUGCAGc -5'
24740 3' -56.6 NC_005264.1 + 84957 0.71 0.655713
Target:  5'- gGGugCUCGCUugCGgccAGGCugcugcguuaGCGUCGu -3'
miRNA:   3'- -CCugGAGCGAugGCac-UCCG----------UGCAGC- -5'
24740 3' -56.6 NC_005264.1 + 87633 0.67 0.891642
Target:  5'- aGGGCCgauGCaGCCGcgUGGGGCGCGg-- -3'
miRNA:   3'- -CCUGGag-CGaUGGC--ACUCCGUGCagc -5'
24740 3' -56.6 NC_005264.1 + 100205 0.69 0.771864
Target:  5'- cGACUUCGCUGagcuCCGcGGGGCGCaGUUGc -3'
miRNA:   3'- cCUGGAGCGAU----GGCaCUCCGUG-CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.