miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 151780 0.67 0.591561
Target:  5'- gCGgGUaCUUG-CCCCGcCAGGCC-CCGCc -3'
miRNA:   3'- -GCaCG-GAGCuGGGGC-GUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 7580 0.67 0.591561
Target:  5'- --cGCCU--ACCCCGC--GCCGCUGCg -3'
miRNA:   3'- gcaCGGAgcUGGGGCGucCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 79727 0.67 0.591561
Target:  5'- gCG-GCCUUGGCgCCCGUcGGCguaCACCuGCg -3'
miRNA:   3'- -GCaCGGAGCUG-GGGCGuCCG---GUGG-CG- -5'
24741 3' -62.9 NC_005264.1 + 71603 0.67 0.581962
Target:  5'- --gGCCUgGAUagagcuaCGCGGGCUAUCGCg -3'
miRNA:   3'- gcaCGGAgCUGgg-----GCGUCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 114747 0.67 0.581962
Target:  5'- gCGUGCa--GAaCCCGCGcGGCCGCgGUa -3'
miRNA:   3'- -GCACGgagCUgGGGCGU-CCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 106010 0.67 0.581962
Target:  5'- --aGCCaCGAgCCgcuaGCuaGGGCCGCCGCg -3'
miRNA:   3'- gcaCGGaGCUgGGg---CG--UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 25135 0.67 0.581962
Target:  5'- cCGUGUCUCGGCCgaGUAGuUgGCCGUg -3'
miRNA:   3'- -GCACGGAGCUGGggCGUCcGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 61486 0.67 0.581962
Target:  5'- gCGcGCCgacgCG-CCCCGCGgucucGGCUagcGCCGCg -3'
miRNA:   3'- -GCaCGGa---GCuGGGGCGU-----CCGG---UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 39555 0.67 0.581962
Target:  5'- gCGUGUUgauuaGAucCCCCGCGGGCCcagagaguauGCUGCc -3'
miRNA:   3'- -GCACGGag---CU--GGGGCGUCCGG----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 127033 0.67 0.572396
Target:  5'- gCGggGCCggcagaGGCgCCCGCcacgacGGcGCCACCGCg -3'
miRNA:   3'- -GCa-CGGag----CUG-GGGCG------UC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 93014 0.67 0.572396
Target:  5'- gCG-GCCUUcACCCCgGCGGcGUCGuCCGCg -3'
miRNA:   3'- -GCaCGGAGcUGGGG-CGUC-CGGU-GGCG- -5'
24741 3' -62.9 NC_005264.1 + 82494 0.67 0.572396
Target:  5'- --cGCCUccaaccgaccCGACCCgCGCGGaGCCAUUGUc -3'
miRNA:   3'- gcaCGGA----------GCUGGG-GCGUC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 51795 0.67 0.572396
Target:  5'- uCGU-CCggCGAgUCCGCGcGaGCCACCGCu -3'
miRNA:   3'- -GCAcGGa-GCUgGGGCGU-C-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 95812 0.67 0.572396
Target:  5'- --cGUCgggGGCCUgCGCaAGGCCGCCGCu -3'
miRNA:   3'- gcaCGGag-CUGGG-GCG-UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 8006 0.67 0.572396
Target:  5'- gCGggGCCggcagaGGCgCCCGCcacgacGGcGCCACCGCg -3'
miRNA:   3'- -GCa-CGGag----CUG-GGGCG------UC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 113457 0.67 0.572396
Target:  5'- gCGggGUCggacCGACCCCGCGGucguGCCACgGUc -3'
miRNA:   3'- -GCa-CGGa---GCUGGGGCGUC----CGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 39533 0.67 0.562867
Target:  5'- aCGUGCuCUCugccgccGCCCCGC-GGUUcCCGCg -3'
miRNA:   3'- -GCACG-GAGc------UGGGGCGuCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 90511 0.67 0.562867
Target:  5'- --cGUCUCGGCCaUCGacgaAGGCCaaACCGCc -3'
miRNA:   3'- gcaCGGAGCUGG-GGCg---UCCGG--UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 158501 0.67 0.562867
Target:  5'- aCGcGCgCUCaGCCgCCagggGCAGGCCugCGCu -3'
miRNA:   3'- -GCaCG-GAGcUGG-GG----CGUCCGGugGCG- -5'
24741 3' -62.9 NC_005264.1 + 158560 0.67 0.562867
Target:  5'- aCGUGCuCUCugccgccGCCCCGC-GGUUcCCGCg -3'
miRNA:   3'- -GCACG-GAGc------UGGGGCGuCCGGuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.