miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 35814 0.69 0.43603
Target:  5'- --cGCCUcugcCGGCCCCGCAauGGCgGCCcguGCa -3'
miRNA:   3'- gcaCGGA----GCUGGGGCGU--CCGgUGG---CG- -5'
24741 3' -62.9 NC_005264.1 + 36716 0.68 0.534561
Target:  5'- aGUGCCaUCGGCUCa----GCCGCCGCg -3'
miRNA:   3'- gCACGG-AGCUGGGgcgucCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 36918 0.72 0.313482
Target:  5'- uCGUcGCCUCucuGGCUCCaGCGGGCCGCgGUu -3'
miRNA:   3'- -GCA-CGGAG---CUGGGG-CGUCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 38784 0.7 0.410999
Target:  5'- aCGUGCCUCGucccggugacguACUCCGC-GGCgACCccgGCg -3'
miRNA:   3'- -GCACGGAGC------------UGGGGCGuCCGgUGG---CG- -5'
24741 3' -62.9 NC_005264.1 + 38851 0.72 0.30013
Target:  5'- gCGUGCCUaCGucgcggagcuCCUCGCGGGUguaCACCGCc -3'
miRNA:   3'- -GCACGGA-GCu---------GGGGCGUCCG---GUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 39351 0.68 0.543945
Target:  5'- --cGCCcagCaACCgCGC-GGCCACCGCa -3'
miRNA:   3'- gcaCGGa--GcUGGgGCGuCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 39474 0.67 0.562867
Target:  5'- aCGcGCgCUCaGCCgCCagggGCAGGCCugCGCu -3'
miRNA:   3'- -GCaCG-GAGcUGG-GG----CGUCCGGugGCG- -5'
24741 3' -62.9 NC_005264.1 + 39533 0.67 0.562867
Target:  5'- aCGUGCuCUCugccgccGCCCCGC-GGUUcCCGCg -3'
miRNA:   3'- -GCACG-GAGc------UGGGGCGuCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 39555 0.67 0.581962
Target:  5'- gCGUGUUgauuaGAucCCCCGCGGGCCcagagaguauGCUGCc -3'
miRNA:   3'- -GCACGGag---CU--GGGGCGUCCGG----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 39715 0.68 0.506773
Target:  5'- ---cCCUCGGCCCCGUcGuGCCgcgacGCCGCc -3'
miRNA:   3'- gcacGGAGCUGGGGCGuC-CGG-----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 39920 0.76 0.172964
Target:  5'- cCGUGUagccagagaaCUCGACCCCGggugGGGCCACgGCg -3'
miRNA:   3'- -GCACG----------GAGCUGGGGCg---UCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 39992 0.68 0.525235
Target:  5'- ---uCCUgCGGCCCCGCccGGGCCcgaacucgcggACCGCc -3'
miRNA:   3'- gcacGGA-GCUGGGGCG--UCCGG-----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 40820 0.68 0.506773
Target:  5'- gGUcGCCgagacucaaGAUCCCGCuauGGCCgGCCGCc -3'
miRNA:   3'- gCA-CGGag-------CUGGGGCGu--CCGG-UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 41361 0.69 0.453198
Target:  5'- aGUGCCgccgcgaaaaCGGCCUcucuaauguacgCGUAGGCCGCgCGCu -3'
miRNA:   3'- gCACGGa---------GCUGGG------------GCGUCCGGUG-GCG- -5'
24741 3' -62.9 NC_005264.1 + 41391 0.71 0.339355
Target:  5'- aCGUGUCcgCGGCCUCcgcuuucuuccuagGCAGGCCGgCGCc -3'
miRNA:   3'- -GCACGGa-GCUGGGG--------------CGUCCGGUgGCG- -5'
24741 3' -62.9 NC_005264.1 + 42003 0.68 0.534561
Target:  5'- uGU-CUUCGugCUCGUcGGCCACgGCg -3'
miRNA:   3'- gCAcGGAGCugGGGCGuCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 42346 0.66 0.64949
Target:  5'- --gGCCUCGcCCCCGCca-CCuacuCCGCg -3'
miRNA:   3'- gcaCGGAGCuGGGGCGuccGGu---GGCG- -5'
24741 3' -62.9 NC_005264.1 + 42601 0.67 0.601185
Target:  5'- uGUGCa---ACCCCGCA-GCCaugGCCGCg -3'
miRNA:   3'- gCACGgagcUGGGGCGUcCGG---UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 42763 0.76 0.168476
Target:  5'- aCGUGCCgagCGACCCgGguGGCCaguuacgGCCGg -3'
miRNA:   3'- -GCACGGa--GCUGGGgCguCCGG-------UGGCg -5'
24741 3' -62.9 NC_005264.1 + 43920 0.72 0.306751
Target:  5'- cCGUcGCCUCGACgUCGaGGGCCAaguaCGCg -3'
miRNA:   3'- -GCA-CGGAGCUGgGGCgUCCGGUg---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.