miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 236 0.66 0.61083
Target:  5'- cCGUGCCU-GGCgCCacagcgagGCGGGCCGCuCGa -3'
miRNA:   3'- -GCACGGAgCUGgGG--------CGUCCGGUG-GCg -5'
24741 3' -62.9 NC_005264.1 + 896 0.71 0.363709
Target:  5'- gGUGUa-CGGCCCCGUgucgcGGGCCGCUGg -3'
miRNA:   3'- gCACGgaGCUGGGGCG-----UCCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 2484 0.66 0.659141
Target:  5'- -cUGCUUCGACgauggUCgGCGGGCC-UCGCg -3'
miRNA:   3'- gcACGGAGCUG-----GGgCGUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 3763 0.66 0.61083
Target:  5'- --cGCCggGGCgCUGCGGGCCcuuggucgaccGCCGCc -3'
miRNA:   3'- gcaCGGagCUGgGGCGUCCGG-----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 4999 0.67 0.553382
Target:  5'- uCGU-UCUCGuCCgCGCcgGGGUCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCuGGgGCG--UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 6213 0.74 0.239956
Target:  5'- gCGUcCUUUGAccCCCCGCcgcGGCCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCU--GGGGCGu--CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 7580 0.67 0.591561
Target:  5'- --cGCCU--ACCCCGC--GCCGCUGCg -3'
miRNA:   3'- gcaCGGAgcUGGGGCGucCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 8006 0.67 0.572396
Target:  5'- gCGggGCCggcagaGGCgCCCGCcacgacGGcGCCACCGCg -3'
miRNA:   3'- -GCa-CGGag----CUG-GGGCG------UC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 9324 0.68 0.515971
Target:  5'- gGUuCCguUCGuCCCCGCcagGGGCgGCCGCc -3'
miRNA:   3'- gCAcGG--AGCuGGGGCG---UCCGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 13591 0.68 0.533625
Target:  5'- --gGCUUCGGCCCCaGCGccacaccGGCCagcgacagugACCGCu -3'
miRNA:   3'- gcaCGGAGCUGGGG-CGU-------CCGG----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 14183 0.66 0.643692
Target:  5'- --cGCCUCGguggcgaucgccgucGCCCCaucGGCCACgGCg -3'
miRNA:   3'- gcaCGGAGC---------------UGGGGcguCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 14477 0.74 0.223461
Target:  5'- gCGUGCUUCGAagaaaauCCUCGCagagaGGGCgACCGCg -3'
miRNA:   3'- -GCACGGAGCU-------GGGGCG-----UCCGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 16426 0.68 0.543945
Target:  5'- --gGCCgcUCGACUgCCGCGGGgCCugcCCGCg -3'
miRNA:   3'- gcaCGG--AGCUGG-GGCGUCC-GGu--GGCG- -5'
24741 3' -62.9 NC_005264.1 + 25135 0.67 0.581962
Target:  5'- cCGUGUCUCGGCCgaGUAGuUgGCCGUg -3'
miRNA:   3'- -GCACGGAGCUGGggCGUCcGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 26073 0.66 0.609865
Target:  5'- uGUGCCUagccCGGCgCUguuuuuggccauaGCuaaacuGGCCACCGCg -3'
miRNA:   3'- gCACGGA----GCUGgGG-------------CGu-----CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 30345 0.69 0.452331
Target:  5'- uGUcCCcCGAguCCCCGCAGgagccccuucggcGCCGCCGCg -3'
miRNA:   3'- gCAcGGaGCU--GGGGCGUC-------------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 32537 0.67 0.553382
Target:  5'- ---uCCUCGGCCCUgGCuguggauguGGCUGCCGCg -3'
miRNA:   3'- gcacGGAGCUGGGG-CGu--------CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 32910 0.66 0.64949
Target:  5'- gCGU-UCUCGAUCgcgcaggggUCGCGGGgCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCUGG---------GGCGUCCgGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 33331 0.7 0.386878
Target:  5'- cCGUcGCCUcCGGCgCCGCcaaacccuGcGCCGCCGCa -3'
miRNA:   3'- -GCA-CGGA-GCUGgGGCGu-------C-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 33994 0.67 0.553382
Target:  5'- aCGUGCggCGGCCCaUGUA-GCCgGCCGCg -3'
miRNA:   3'- -GCACGgaGCUGGG-GCGUcCGG-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.