miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 154840 0.69 0.43603
Target:  5'- --cGCCUcugcCGGCCCCGCAauGGCgGCCcguGCa -3'
miRNA:   3'- gcaCGGA----GCUGGGGCGU--CCGgUGG---CG- -5'
24741 3' -62.9 NC_005264.1 + 119922 0.71 0.363709
Target:  5'- gGUGUa-CGGCCCCGUgucgcGGGCCGCUGg -3'
miRNA:   3'- gCACGgaGCUGGGGCG-----UCCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 65583 0.71 0.371324
Target:  5'- cCGUGCCaaGGCCCgGC-GGCCACaucuuGCu -3'
miRNA:   3'- -GCACGGagCUGGGgCGuCCGGUGg----CG- -5'
24741 3' -62.9 NC_005264.1 + 33331 0.7 0.386878
Target:  5'- cCGUcGCCUcCGGCgCCGCcaaacccuGcGCCGCCGCa -3'
miRNA:   3'- -GCA-CGGA-GCUGgGGCGu-------C-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 134513 0.7 0.386878
Target:  5'- uCGUGCCgauacCGACUagaCGUAGGCgCGCgGCa -3'
miRNA:   3'- -GCACGGa----GCUGGg--GCGUCCG-GUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 157810 0.7 0.410999
Target:  5'- aCGUGCCUCGucccggugacguACUCCGC-GGCgACCccgGCg -3'
miRNA:   3'- -GCACGGAGC------------UGGGGCGuCCGgUGG---CG- -5'
24741 3' -62.9 NC_005264.1 + 64504 0.7 0.427588
Target:  5'- aGUcGCCUgGACCgCGCuGuucuguccgcGCCGCCGCg -3'
miRNA:   3'- gCA-CGGAgCUGGgGCGuC----------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 128722 0.7 0.427588
Target:  5'- uCGcGCCUCGACgCUGUuucGGCCGCUGa -3'
miRNA:   3'- -GCaCGGAGCUGgGGCGu--CCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 85064 0.69 0.43603
Target:  5'- --gGCCU--GCCCCGUuccccAGGuCCGCCGCa -3'
miRNA:   3'- gcaCGGAgcUGGGGCG-----UCC-GGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 160418 0.71 0.339355
Target:  5'- aCGUGUCcgCGGCCUCcgcuuucuuccuagGCAGGCCGgCGCc -3'
miRNA:   3'- -GCACGGa-GCUGGGG--------------CGUCCGGUgGCG- -5'
24741 3' -62.9 NC_005264.1 + 75219 0.72 0.320324
Target:  5'- -cUGCaUCGGCCCUGCGcGGCgGCCGUc -3'
miRNA:   3'- gcACGgAGCUGGGGCGU-CCGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 57967 0.72 0.313482
Target:  5'- uGUGCCuaucgucaUCGGaguCCCCGCGcGGCgGCCGUg -3'
miRNA:   3'- gCACGG--------AGCU---GGGGCGU-CCGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 55893 0.79 0.103585
Target:  5'- --gGCCUCaGAUCCUGC-GGCCGCCGCa -3'
miRNA:   3'- gcaCGGAG-CUGGGGCGuCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 161789 0.76 0.168476
Target:  5'- aCGUGCCgagCGACCCgGguGGCCaguuacgGCCGg -3'
miRNA:   3'- -GCACGGa--GCUGGGgCguCCGG-------UGGCg -5'
24741 3' -62.9 NC_005264.1 + 158947 0.76 0.172964
Target:  5'- cCGUGUagccagagaaCUCGACCCCGggugGGGCCACgGCg -3'
miRNA:   3'- -GCACG----------GAGCUGGGGCg---UCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 139500 0.75 0.21087
Target:  5'- --cGCCUCggggcaGACCCCGCuGGCCgcgauguuguggcccGCCGCa -3'
miRNA:   3'- gcaCGGAG------CUGGGGCGuCCGG---------------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 61064 0.74 0.239956
Target:  5'- --cGUCUCGGCUCCGUucaGGGCCGCCa- -3'
miRNA:   3'- gcaCGGAGCUGGGGCG---UCCGGUGGcg -5'
24741 3' -62.9 NC_005264.1 + 125240 0.74 0.239956
Target:  5'- gCGUcCUUUGAccCCCCGCcgcGGCCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCU--GGGGCGu--CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 38851 0.72 0.30013
Target:  5'- gCGUGCCUaCGucgcggagcuCCUCGCGGGUguaCACCGCc -3'
miRNA:   3'- -GCACGGA-GCu---------GGGGCGUCCG---GUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 36918 0.72 0.313482
Target:  5'- uCGUcGCCUCucuGGCUCCaGCGGGCCGCgGUu -3'
miRNA:   3'- -GCA-CGGAG---CUGGGG-CGUCCGGUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.