miRNA display CGI


Results 1 - 20 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 146351 1.11 0.000601
Target:  5'- gCGUGCCUCGACCCCGCAGGCCACCGCg -3'
miRNA:   3'- -GCACGGAGCUGGGGCGUCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 55893 0.79 0.103585
Target:  5'- --gGCCUCaGAUCCUGC-GGCCGCCGCa -3'
miRNA:   3'- gcaCGGAG-CUGGGGCGuCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 161789 0.76 0.168476
Target:  5'- aCGUGCCgagCGACCCgGguGGCCaguuacgGCCGg -3'
miRNA:   3'- -GCACGGa--GCUGGGgCguCCGG-------UGGCg -5'
24741 3' -62.9 NC_005264.1 + 42763 0.76 0.168476
Target:  5'- aCGUGCCgagCGACCCgGguGGCCaguuacgGCCGg -3'
miRNA:   3'- -GCACGGa--GCUGGGgCguCCGG-------UGGCg -5'
24741 3' -62.9 NC_005264.1 + 158947 0.76 0.172964
Target:  5'- cCGUGUagccagagaaCUCGACCCCGggugGGGCCACgGCg -3'
miRNA:   3'- -GCACG----------GAGCUGGGGCg---UCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 39920 0.76 0.172964
Target:  5'- cCGUGUagccagagaaCUCGACCCCGggugGGGCCACgGCg -3'
miRNA:   3'- -GCACG----------GAGCUGGGGCg---UCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 139500 0.75 0.21087
Target:  5'- --cGCCUCggggcaGACCCCGCuGGCCgcgauguuguggcccGCCGCa -3'
miRNA:   3'- gcaCGGAG------CUGGGGCGuCCGG---------------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 97370 0.75 0.218856
Target:  5'- gCGUGCaugCGAgCUCGCAGGCCcgcagGCCGUg -3'
miRNA:   3'- -GCACGga-GCUgGGGCGUCCGG-----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 14477 0.74 0.223461
Target:  5'- gCGUGCUUCGAagaaaauCCUCGCagagaGGGCgACCGCg -3'
miRNA:   3'- -GCACGGAGCU-------GGGGCG-----UCCGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 144391 0.74 0.234526
Target:  5'- aCGUGCUccuacacguccuUCGACCCCGCgccgagcgagaGGGCgCGCCuGCg -3'
miRNA:   3'- -GCACGG------------AGCUGGGGCG-----------UCCG-GUGG-CG- -5'
24741 3' -62.9 NC_005264.1 + 6213 0.74 0.239956
Target:  5'- gCGUcCUUUGAccCCCCGCcgcGGCCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCU--GGGGCGu--CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 125240 0.74 0.239956
Target:  5'- gCGUcCUUUGAccCCCCGCcgcGGCCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCU--GGGGCGu--CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 61064 0.74 0.239956
Target:  5'- --cGUCUCGGCUCCGUucaGGGCCGCCa- -3'
miRNA:   3'- gcaCGGAGCUGGGGCG---UCCGGUGGcg -5'
24741 3' -62.9 NC_005264.1 + 116238 0.72 0.30013
Target:  5'- cCGU-CCUCG-CCCCGCAGGgacagagccuCCGCaCGCg -3'
miRNA:   3'- -GCAcGGAGCuGGGGCGUCC----------GGUG-GCG- -5'
24741 3' -62.9 NC_005264.1 + 38851 0.72 0.30013
Target:  5'- gCGUGCCUaCGucgcggagcuCCUCGCGGGUguaCACCGCc -3'
miRNA:   3'- -GCACGGA-GCu---------GGGGCGUCCG---GUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 43920 0.72 0.306751
Target:  5'- cCGUcGCCUCGACgUCGaGGGCCAaguaCGCg -3'
miRNA:   3'- -GCA-CGGAGCUGgGGCgUCCGGUg---GCG- -5'
24741 3' -62.9 NC_005264.1 + 36918 0.72 0.313482
Target:  5'- uCGUcGCCUCucuGGCUCCaGCGGGCCGCgGUu -3'
miRNA:   3'- -GCA-CGGAG---CUGGGG-CGUCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 57967 0.72 0.313482
Target:  5'- uGUGCCuaucgucaUCGGaguCCCCGCGcGGCgGCCGUg -3'
miRNA:   3'- gCACGG--------AGCU---GGGGCGU-CCGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 75219 0.72 0.320324
Target:  5'- -cUGCaUCGGCCCUGCGcGGCgGCCGUc -3'
miRNA:   3'- gcACGgAGCUGGGGCGU-CCGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 132268 0.72 0.332212
Target:  5'- gCGUGuCCUcuccugCGACCCCGCcGGUagaagugaucgcgaCACCGCg -3'
miRNA:   3'- -GCAC-GGA------GCUGGGGCGuCCG--------------GUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.