miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 72740 0.67 0.961386
Target:  5'- aCGUUCGAuuauucuAGCUUccgugACGCGUGCGCCguaGCg -3'
miRNA:   3'- -GCGAGCU-------UUGAG-----UGCGCGUGUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 37770 0.67 0.958093
Target:  5'- uGCUUGAGACUCGCcuuCGCGCCg-- -3'
miRNA:   3'- gCGAGCUUUGAGUGcgcGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 131693 0.67 0.958093
Target:  5'- gGCUCGcAAGCgua-GCGUGgGCCUGCg -3'
miRNA:   3'- gCGAGC-UUUGagugCGCGUgUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 5940 0.67 0.958093
Target:  5'- gGCUCGGAACcccUCGCGCagggcagcgGCGCAUUcGCg -3'
miRNA:   3'- gCGAGCUUUG---AGUGCG---------CGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 156796 0.67 0.958093
Target:  5'- uGCUUGAGACUCGCcuuCGCGCCg-- -3'
miRNA:   3'- gCGAGCUUUGAGUGcgcGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 152125 0.67 0.958093
Target:  5'- cCGCUUGcuuGCUCgcugACGCGCAUACUg-- -3'
miRNA:   3'- -GCGAGCuu-UGAG----UGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 33098 0.67 0.958093
Target:  5'- cCGCUUGcuuGCUCgcugACGCGCAUACUg-- -3'
miRNA:   3'- -GCGAGCuu-UGAG----UGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 124966 0.67 0.958093
Target:  5'- gGCUCGGAACcccUCGCGCagggcagcgGCGCAUUcGCg -3'
miRNA:   3'- gCGAGCUUUG---AGUGCG---------CGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 29925 0.67 0.954214
Target:  5'- gCGCUaGGGAggUACGCGCuGCGCCUAg -3'
miRNA:   3'- -GCGAgCUUUgaGUGCGCG-UGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 117416 0.67 0.954214
Target:  5'- aCGCuaUCGggGCUguCGCGgCGCGCaggGCg -3'
miRNA:   3'- -GCG--AGCuuUGAguGCGC-GUGUGga-UG- -5'
24743 3' -52.9 NC_005264.1 + 49196 0.67 0.954214
Target:  5'- uGCUCaagcGCUCACGCccGCGCuACCUGg -3'
miRNA:   3'- gCGAGcuu-UGAGUGCG--CGUG-UGGAUg -5'
24743 3' -52.9 NC_005264.1 + 84853 0.67 0.954214
Target:  5'- uGCUCGGuaucgcccGCUCcgguACGCGCgGCGCCgGCa -3'
miRNA:   3'- gCGAGCUu-------UGAG----UGCGCG-UGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 27666 0.67 0.954214
Target:  5'- gCGCUCGGAcCgaggUACGCGgCugGCCUcuGCc -3'
miRNA:   3'- -GCGAGCUUuGa---GUGCGC-GugUGGA--UG- -5'
24743 3' -52.9 NC_005264.1 + 62692 0.67 0.954214
Target:  5'- aGCgCGAAGaaCGCGUGC-UACCUGCg -3'
miRNA:   3'- gCGaGCUUUgaGUGCGCGuGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 131549 0.68 0.950099
Target:  5'- aGUcggCGAAGCUCACGCuucugcaugugcGCgGCACCUGg -3'
miRNA:   3'- gCGa--GCUUUGAGUGCG------------CG-UGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 54152 0.68 0.950099
Target:  5'- aCGCUaaacuAAACuaUCugGCGCACACCg-- -3'
miRNA:   3'- -GCGAgc---UUUG--AGugCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 42011 0.68 0.944392
Target:  5'- uGCUCGucggccacggcggcAGugUCgACGCGCACgcgGCCUAUc -3'
miRNA:   3'- gCGAGC--------------UUugAG-UGCGCGUG---UGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 157424 0.68 0.941149
Target:  5'- aCGC-CGAGACagaugC-CGCGUACGcCCUGCu -3'
miRNA:   3'- -GCGaGCUUUGa----GuGCGCGUGU-GGAUG- -5'
24743 3' -52.9 NC_005264.1 + 38397 0.68 0.941149
Target:  5'- aCGC-CGAGACagaugC-CGCGUACGcCCUGCu -3'
miRNA:   3'- -GCGaGCUUUGa----GuGCGCGUGU-GGAUG- -5'
24743 3' -52.9 NC_005264.1 + 100234 0.68 0.941149
Target:  5'- uGCUCGGAACgUC-CGCGC-CGCUa-- -3'
miRNA:   3'- gCGAGCUUUG-AGuGCGCGuGUGGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.