miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 33098 0.67 0.958093
Target:  5'- cCGCUUGcuuGCUCgcugACGCGCAUACUg-- -3'
miRNA:   3'- -GCGAGCuu-UGAG----UGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 33220 0.72 0.787798
Target:  5'- gCGCUCGGcgucuACUCGagaagcuucgccgcCGCGCcgcaGCGCCUGCa -3'
miRNA:   3'- -GCGAGCUu----UGAGU--------------GCGCG----UGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 35013 0.67 0.965162
Target:  5'- gCGCUCGAAGagga-GCGCugGCCg-- -3'
miRNA:   3'- -GCGAGCUUUgagugCGCGugUGGaug -5'
24743 3' -52.9 NC_005264.1 + 37770 0.67 0.958093
Target:  5'- uGCUUGAGACUCGCcuuCGCGCCg-- -3'
miRNA:   3'- gCGAGCUUUGAGUGcgcGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 38397 0.68 0.941149
Target:  5'- aCGC-CGAGACagaugC-CGCGUACGcCCUGCu -3'
miRNA:   3'- -GCGaGCUUUGa----GuGCGCGUGU-GGAUG- -5'
24743 3' -52.9 NC_005264.1 + 39092 0.68 0.925886
Target:  5'- uGUUCuccuAGCUgCcCGUGCACGCCUACg -3'
miRNA:   3'- gCGAGcu--UUGA-GuGCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 40182 0.66 0.981285
Target:  5'- uCGCgaCGAAugUCAgCGCGCcCGCCcucGCg -3'
miRNA:   3'- -GCGa-GCUUugAGU-GCGCGuGUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 42011 0.68 0.944392
Target:  5'- uGCUCGucggccacggcggcAGugUCgACGCGCACgcgGCCUAUc -3'
miRNA:   3'- gCGAGC--------------UUugAG-UGCGCGUG---UGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 42988 0.66 0.981285
Target:  5'- aGCucgUCGAGGCaUAUGCaGCACGgCUGCg -3'
miRNA:   3'- gCG---AGCUUUGaGUGCG-CGUGUgGAUG- -5'
24743 3' -52.9 NC_005264.1 + 45542 0.67 0.961741
Target:  5'- uCGCacgCGGAgaGCggCAuCGCGCACGCgUACg -3'
miRNA:   3'- -GCGa--GCUU--UGa-GU-GCGCGUGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 46414 0.72 0.799776
Target:  5'- cCGCcgCGAGGCUgCACGC-CGC-CCUGCg -3'
miRNA:   3'- -GCGa-GCUUUGA-GUGCGcGUGuGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 47598 0.69 0.902082
Target:  5'- aCGCguuggggGAGACUCGCGCGaacgGCGCgUACa -3'
miRNA:   3'- -GCGag-----CUUUGAGUGCGCg---UGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 49196 0.67 0.954214
Target:  5'- uGCUCaagcGCUCACGCccGCGCuACCUGg -3'
miRNA:   3'- gCGAGcuu-UGAGUGCG--CGUG-UGGAUg -5'
24743 3' -52.9 NC_005264.1 + 49429 0.69 0.9084
Target:  5'- cCGCacaUGGAGCUCucugccguCGCGCAgcuCGCCUGCa -3'
miRNA:   3'- -GCGa--GCUUUGAGu-------GCGCGU---GUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 49497 0.69 0.920304
Target:  5'- uGCguagCGGGuuuacAUUCAUGCGCAggUACCUGCa -3'
miRNA:   3'- gCGa---GCUU-----UGAGUGCGCGU--GUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 50550 0.69 0.902082
Target:  5'- gGCcugUCGAAGCU-AgGCGCGCGCgUGCg -3'
miRNA:   3'- gCG---AGCUUUGAgUgCGCGUGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 54152 0.68 0.950099
Target:  5'- aCGCUaaacuAAACuaUCugGCGCACACCg-- -3'
miRNA:   3'- -GCGAgc---UUUG--AGugCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 56753 0.66 0.981285
Target:  5'- gGC-CGAGAUUgGCaCGCACGCCa-- -3'
miRNA:   3'- gCGaGCUUUGAgUGcGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 57490 0.67 0.961741
Target:  5'- gGCggCGAAgauGCUgGCGCGCGCGgCgGCg -3'
miRNA:   3'- gCGa-GCUU---UGAgUGCGCGUGUgGaUG- -5'
24743 3' -52.9 NC_005264.1 + 59774 0.66 0.970475
Target:  5'- aCGCUucgCGGGACUCgucgcccgcaggggGCGCGUagcGCACCaUGCu -3'
miRNA:   3'- -GCGA---GCUUUGAG--------------UGCGCG---UGUGG-AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.