miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 151 0.69 0.919732
Target:  5'- aCGC-CGgcGCgcaGCGCGCcgaccguACACCUACg -3'
miRNA:   3'- -GCGaGCuuUGag-UGCGCG-------UGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 645 0.67 0.968363
Target:  5'- gCGCgauaGAGGCUCACGCGCcCcCCc-- -3'
miRNA:   3'- -GCGag--CUUUGAGUGCGCGuGuGGaug -5'
24743 3' -52.9 NC_005264.1 + 3289 0.69 0.914475
Target:  5'- gCGCcagagUCGuGAGCUCGCGCgggaucGCGCGCCgUGCa -3'
miRNA:   3'- -GCG-----AGC-UUUGAGUGCG------CGUGUGG-AUG- -5'
24743 3' -52.9 NC_005264.1 + 5940 0.67 0.958093
Target:  5'- gGCUCGGAACcccUCGCGCagggcagcgGCGCAUUcGCg -3'
miRNA:   3'- gCGAGCUUUG---AGUGCG---------CGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 5998 0.66 0.971349
Target:  5'- aGCgCGgcGgUCGCuGUGCGCACCUGa -3'
miRNA:   3'- gCGaGCuuUgAGUG-CGCGUGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 7861 0.69 0.902082
Target:  5'- aGCUgCGAGGCcccCACGUucgcuGCGCAUCUGCg -3'
miRNA:   3'- gCGA-GCUUUGa--GUGCG-----CGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 7913 0.66 0.976704
Target:  5'- aCGCUCu-GGCUagcaACGCGCGCGuCC-ACg -3'
miRNA:   3'- -GCGAGcuUUGAg---UGCGCGUGU-GGaUG- -5'
24743 3' -52.9 NC_005264.1 + 10695 0.7 0.888724
Target:  5'- --gUCGAuguACUC-CGUGCugGCCUACc -3'
miRNA:   3'- gcgAGCUu--UGAGuGCGCGugUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 15256 0.7 0.859242
Target:  5'- gGCUCGAGggggcACUCGCuuuCGgGCAUCUACg -3'
miRNA:   3'- gCGAGCUU-----UGAGUGc--GCgUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 15577 0.75 0.619518
Target:  5'- aGCUCGuggccAAGCUUGCGgGCGCAgCUGCg -3'
miRNA:   3'- gCGAGC-----UUUGAGUGCgCGUGUgGAUG- -5'
24743 3' -52.9 NC_005264.1 + 21807 0.67 0.968363
Target:  5'- cCGCaUgGAGACUCGCGa-CACGCCa-- -3'
miRNA:   3'- -GCG-AgCUUUGAGUGCgcGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 22452 0.66 0.976704
Target:  5'- aCGCUuCGAAugU-ACGCGCAUAUUggGCg -3'
miRNA:   3'- -GCGA-GCUUugAgUGCGCGUGUGGa-UG- -5'
24743 3' -52.9 NC_005264.1 + 23413 0.67 0.965162
Target:  5'- gGC-CGAg---CACGCGUACGCCaGCg -3'
miRNA:   3'- gCGaGCUuugaGUGCGCGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 24699 0.67 0.964159
Target:  5'- aCGC-CGAAgauggucgguaugaGgUCugGCGuUACGCCUACg -3'
miRNA:   3'- -GCGaGCUU--------------UgAGugCGC-GUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 25940 0.66 0.981285
Target:  5'- uGCaCGAcgGGCUCACGUaCGCGCCcACu -3'
miRNA:   3'- gCGaGCU--UUGAGUGCGcGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 27666 0.67 0.954214
Target:  5'- gCGCUCGGAcCgaggUACGCGgCugGCCUcuGCc -3'
miRNA:   3'- -GCGAGCUUuGa---GUGCGC-GugUGGA--UG- -5'
24743 3' -52.9 NC_005264.1 + 27706 0.72 0.790585
Target:  5'- aCGCUCGcu-CUCaAUGCGCACACUa-- -3'
miRNA:   3'- -GCGAGCuuuGAG-UGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 29773 0.68 0.941149
Target:  5'- aGCUC---GCUCGCGgcuCGCACGCC-ACg -3'
miRNA:   3'- gCGAGcuuUGAGUGC---GCGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 29925 0.67 0.954214
Target:  5'- gCGCUaGGGAggUACGCGCuGCGCCUAg -3'
miRNA:   3'- -GCGAgCUUUgaGUGCGCG-UGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 30830 0.73 0.719617
Target:  5'- uGCUCGAAcggGCUCGCGUcgucgucggcggcgGCGCGCCg-- -3'
miRNA:   3'- gCGAGCUU---UGAGUGCG--------------CGUGUGGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.