miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 146914 1.11 0.004209
Target:  5'- aCGCUCGAAACUCACGCGCACACCUACa -3'
miRNA:   3'- -GCGAGCUUUGAGUGCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 117882 0.69 0.920304
Target:  5'- cCGCUCuaccacgaaGGGAgUCACGCGCGCaacggGCCcGCg -3'
miRNA:   3'- -GCGAG---------CUUUgAGUGCGCGUG-----UGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 111033 0.68 0.925886
Target:  5'- gGUUCGAAgcggugGCUCGCGCGgACucGCCggACg -3'
miRNA:   3'- gCGAGCUU------UGAGUGCGCgUG--UGGa-UG- -5'
24743 3' -52.9 NC_005264.1 + 159209 0.66 0.981285
Target:  5'- uCGCgaCGAAugUCAgCGCGCcCGCCcucGCg -3'
miRNA:   3'- -GCGa-GCUUugAGU-GCGCGuGUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 149856 0.73 0.719617
Target:  5'- uGCUCGAAcggGCUCGCGUcgucgucggcggcgGCGCGCCg-- -3'
miRNA:   3'- gCGAGCUU---UGAGUGCG--------------CGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 136465 0.72 0.771768
Target:  5'- gCGCUCaGAGACggCGC-CGCGCAgCCUGCc -3'
miRNA:   3'- -GCGAG-CUUUGa-GUGcGCGUGU-GGAUG- -5'
24743 3' -52.9 NC_005264.1 + 46414 0.72 0.799776
Target:  5'- cCGCcgCGAGGCUgCACGC-CGC-CCUGCg -3'
miRNA:   3'- -GCGa-GCUUUGA-GUGCGcGUGuGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 15256 0.7 0.859242
Target:  5'- gGCUCGAGggggcACUCGCuuuCGgGCAUCUACg -3'
miRNA:   3'- gCGAGCUU-----UGAGUGc--GCgUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 7861 0.69 0.902082
Target:  5'- aGCUgCGAGGCcccCACGUucgcuGCGCAUCUGCg -3'
miRNA:   3'- gCGA-GCUUUGa--GUGCG-----CGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 81764 0.69 0.920304
Target:  5'- aGCaCGAGACgugCGCGCaGCAUACCg-- -3'
miRNA:   3'- gCGaGCUUUGa--GUGCG-CGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 49429 0.69 0.9084
Target:  5'- cCGCacaUGGAGCUCucugccguCGCGCAgcuCGCCUGCa -3'
miRNA:   3'- -GCGa--GCUUUGAGu-------GCGCGU---GUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 10695 0.7 0.888724
Target:  5'- --gUCGAuguACUC-CGUGCugGCCUACc -3'
miRNA:   3'- gcgAGCUu--UGAGuGCGCGugUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 65625 0.76 0.58838
Target:  5'- gGCUCGuggguACcCGCGCGCGCACCg-- -3'
miRNA:   3'- gCGAGCuu---UGaGUGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 3289 0.69 0.914475
Target:  5'- gCGCcagagUCGuGAGCUCGCGCgggaucGCGCGCCgUGCa -3'
miRNA:   3'- -GCG-----AGC-UUUGAGUGCG------CGUGUGG-AUG- -5'
24743 3' -52.9 NC_005264.1 + 139561 0.75 0.634093
Target:  5'- gCGCUCGcuGCaCGCGCGCGCgaaauagacaacgugACCUGCu -3'
miRNA:   3'- -GCGAGCuuUGaGUGCGCGUG---------------UGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 85355 0.7 0.877363
Target:  5'- uCGCUCGcAGCgacugcgagguuccgUCGCGUccaucGUACACCUACg -3'
miRNA:   3'- -GCGAGCuUUG---------------AGUGCG-----CGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 119178 0.69 0.919732
Target:  5'- aCGC-CGgcGCgcaGCGCGCcgaccguACACCUACg -3'
miRNA:   3'- -GCGaGCuuUGag-UGCGCG-------UGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 39092 0.68 0.925886
Target:  5'- uGUUCuccuAGCUgCcCGUGCACGCCUACg -3'
miRNA:   3'- gCGAGcu--UUGA-GuGCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 61250 0.74 0.69212
Target:  5'- gCGCUCc-AGCUCACG-GCGCGCCUcgGCg -3'
miRNA:   3'- -GCGAGcuUUGAGUGCgCGUGUGGA--UG- -5'
24743 3' -52.9 NC_005264.1 + 33220 0.72 0.787798
Target:  5'- gCGCUCGGcgucuACUCGagaagcuucgccgcCGCGCcgcaGCGCCUGCa -3'
miRNA:   3'- -GCGAGCUu----UGAGU--------------GCGCG----UGUGGAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.