miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 146914 1.11 0.004209
Target:  5'- aCGCUCGAAACUCACGCGCACACCUACa -3'
miRNA:   3'- -GCGAGCUUUGAGUGCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 83872 0.81 0.346402
Target:  5'- gGCUCGGccgugccgAACUU-CGCGCACACCUGCc -3'
miRNA:   3'- gCGAGCU--------UUGAGuGCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 65625 0.76 0.58838
Target:  5'- gGCUCGuggguACcCGCGCGCGCACCg-- -3'
miRNA:   3'- gCGAGCuu---UGaGUGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 15577 0.75 0.619518
Target:  5'- aGCUCGuggccAAGCUUGCGgGCGCAgCUGCg -3'
miRNA:   3'- gCGAGC-----UUUGAGUGCgCGUGUgGAUG- -5'
24743 3' -52.9 NC_005264.1 + 103201 0.75 0.629928
Target:  5'- uGCUCGcuGCUUGCGagccCGCACACCUGa -3'
miRNA:   3'- gCGAGCuuUGAGUGC----GCGUGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 139561 0.75 0.634093
Target:  5'- gCGCUCGcuGCaCGCGCGCGCgaaauagacaacgugACCUGCu -3'
miRNA:   3'- -GCGAGCuuUGaGUGCGCGUG---------------UGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 147077 0.74 0.671498
Target:  5'- uCGCcCGGAgccacGCUCGCGCGCACACa--- -3'
miRNA:   3'- -GCGaGCUU-----UGAGUGCGCGUGUGgaug -5'
24743 3' -52.9 NC_005264.1 + 61250 0.74 0.69212
Target:  5'- gCGCUCc-AGCUCACG-GCGCGCCUcgGCg -3'
miRNA:   3'- -GCGAGcuUUGAGUGCgCGUGUGGA--UG- -5'
24743 3' -52.9 NC_005264.1 + 140818 0.73 0.712535
Target:  5'- aGC-CGAAcGCUCGCGgGCAaaaaACCUACg -3'
miRNA:   3'- gCGaGCUU-UGAGUGCgCGUg---UGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 149856 0.73 0.719617
Target:  5'- uGCUCGAAcggGCUCGCGUcgucgucggcggcgGCGCGCCg-- -3'
miRNA:   3'- gCGAGCUU---UGAGUGCG--------------CGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 30830 0.73 0.719617
Target:  5'- uGCUCGAAcggGCUCGCGUcgucgucggcggcgGCGCGCCg-- -3'
miRNA:   3'- gCGAGCUU---UGAGUGCG--------------CGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 136465 0.72 0.771768
Target:  5'- gCGCUCaGAGACggCGC-CGCGCAgCCUGCc -3'
miRNA:   3'- -GCGAG-CUUUGa-GUGcGCGUGU-GGAUG- -5'
24743 3' -52.9 NC_005264.1 + 33220 0.72 0.787798
Target:  5'- gCGCUCGGcgucuACUCGagaagcuucgccgcCGCGCcgcaGCGCCUGCa -3'
miRNA:   3'- -GCGAGCUu----UGAGU--------------GCGCG----UGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 27706 0.72 0.790585
Target:  5'- aCGCUCGcu-CUCaAUGCGCACACUa-- -3'
miRNA:   3'- -GCGAGCuuuGAG-UGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 46414 0.72 0.799776
Target:  5'- cCGCcgCGAGGCUgCACGC-CGC-CCUGCg -3'
miRNA:   3'- -GCGa-GCUUUGA-GUGCGcGUGuGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 112278 0.72 0.80881
Target:  5'- gCGCUUcccg--CACGCGCGCGCCUAg -3'
miRNA:   3'- -GCGAGcuuugaGUGCGCGUGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 88118 0.71 0.851326
Target:  5'- aGCagGAGACaguuUCGCGCGCcGCGcCCUACa -3'
miRNA:   3'- gCGagCUUUG----AGUGCGCG-UGU-GGAUG- -5'
24743 3' -52.9 NC_005264.1 + 69577 0.7 0.859242
Target:  5'- aGC-CGggGCcCugGCGC-CACCUAg -3'
miRNA:   3'- gCGaGCuuUGaGugCGCGuGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 139414 0.7 0.859242
Target:  5'- -aCUCGAGACgggcaccgCugGCGUACGCgUGCu -3'
miRNA:   3'- gcGAGCUUUGa-------GugCGCGUGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 15256 0.7 0.859242
Target:  5'- gGCUCGAGggggcACUCGCuuuCGgGCAUCUACg -3'
miRNA:   3'- gCGAGCUU-----UGAGUGc--GCgUGUGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.