miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 54152 0.68 0.950099
Target:  5'- aCGCUaaacuAAACuaUCugGCGCACACCg-- -3'
miRNA:   3'- -GCGAgc---UUUG--AGugCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 111033 0.68 0.925886
Target:  5'- gGUUCGAAgcggugGCUCGCGCGgACucGCCggACg -3'
miRNA:   3'- gCGAGCUU------UGAGUGCGCgUG--UGGa-UG- -5'
24743 3' -52.9 NC_005264.1 + 10695 0.7 0.888724
Target:  5'- --gUCGAuguACUC-CGUGCugGCCUACc -3'
miRNA:   3'- gcgAGCUu--UGAGuGCGCGugUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 61250 0.74 0.69212
Target:  5'- gCGCUCc-AGCUCACG-GCGCGCCUcgGCg -3'
miRNA:   3'- -GCGAGcuUUGAGUGCgCGUGUGGA--UG- -5'
24743 3' -52.9 NC_005264.1 + 23413 0.67 0.965162
Target:  5'- gGC-CGAg---CACGCGUACGCCaGCg -3'
miRNA:   3'- gCGaGCUuugaGUGCGCGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 124966 0.67 0.958093
Target:  5'- gGCUCGGAACcccUCGCGCagggcagcgGCGCAUUcGCg -3'
miRNA:   3'- gCGAGCUUUG---AGUGCG---------CGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 117882 0.69 0.920304
Target:  5'- cCGCUCuaccacgaaGGGAgUCACGCGCGCaacggGCCcGCg -3'
miRNA:   3'- -GCGAG---------CUUUgAGUGCGCGUG-----UGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 139561 0.75 0.634093
Target:  5'- gCGCUCGcuGCaCGCGCGCGCgaaauagacaacgugACCUGCu -3'
miRNA:   3'- -GCGAGCuuUGaGUGCGCGUG---------------UGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 156796 0.67 0.958093
Target:  5'- uGCUUGAGACUCGCcuuCGCGCCg-- -3'
miRNA:   3'- gCGAGCUUUGAGUGcgcGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 65625 0.76 0.58838
Target:  5'- gGCUCGuggguACcCGCGCGCGCACCg-- -3'
miRNA:   3'- gCGAGCuu---UGaGUGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 39092 0.68 0.925886
Target:  5'- uGUUCuccuAGCUgCcCGUGCACGCCUACg -3'
miRNA:   3'- gCGAGcu--UUGA-GuGCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 62692 0.67 0.954214
Target:  5'- aGCgCGAAGaaCGCGUGC-UACCUGCg -3'
miRNA:   3'- gCGaGCUUUgaGUGCGCGuGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 3289 0.69 0.914475
Target:  5'- gCGCcagagUCGuGAGCUCGCGCgggaucGCGCGCCgUGCa -3'
miRNA:   3'- -GCG-----AGC-UUUGAGUGCG------CGUGUGG-AUG- -5'
24743 3' -52.9 NC_005264.1 + 7861 0.69 0.902082
Target:  5'- aGCUgCGAGGCcccCACGUucgcuGCGCAUCUGCg -3'
miRNA:   3'- gCGA-GCUUUGa--GUGCG-----CGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 46414 0.72 0.799776
Target:  5'- cCGCcgCGAGGCUgCACGC-CGC-CCUGCg -3'
miRNA:   3'- -GCGa-GCUUUGA-GUGCGcGUGuGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 149856 0.73 0.719617
Target:  5'- uGCUCGAAcggGCUCGCGUcgucgucggcggcgGCGCGCCg-- -3'
miRNA:   3'- gCGAGCUU---UGAGUGCG--------------CGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 5998 0.66 0.971349
Target:  5'- aGCgCGgcGgUCGCuGUGCGCACCUGa -3'
miRNA:   3'- gCGaGCuuUgAGUG-CGCGUGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 154040 0.67 0.965162
Target:  5'- gCGCUCGAAGagga-GCGCugGCCg-- -3'
miRNA:   3'- -GCGAGCUUUgagugCGCGugUGGaug -5'
24743 3' -52.9 NC_005264.1 + 84139 0.67 0.963136
Target:  5'- aGCUCGcGAGCcCcgggaaguggucgcaGCGCGCGCGCCg-- -3'
miRNA:   3'- gCGAGC-UUUGaG---------------UGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 152125 0.67 0.958093
Target:  5'- cCGCUUGcuuGCUCgcugACGCGCAUACUg-- -3'
miRNA:   3'- -GCGAGCuu-UGAG----UGCGCGUGUGGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.