Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 136197 | 0.67 | 0.995612 |
Target: 5'- cGGCGCCGGCGCcgcgcuaAGGUuCUAUAa -3' miRNA: 3'- -CUGUGGCCGCGuuuc---UCUAuGAUAUa -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 28108 | 0.67 | 0.996334 |
Target: 5'- cGCACCGGCGCcuaucgugGCUAUGUa -3' miRNA: 3'- cUGUGGCCGCGuuucucuaUGAUAUA- -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 144268 | 0.67 | 0.995887 |
Target: 5'- cGACACCGaguucuccgugccgcGCGCAAacAGGGGUACg---- -3' miRNA: 3'- -CUGUGGC---------------CGCGUU--UCUCUAUGauaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 96868 | 0.67 | 0.996273 |
Target: 5'- aGACACUaGGCGCGAgcGGAGgAUACa---- -3' miRNA: 3'- -CUGUGG-CCGCGUU--UCUC-UAUGauaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 21570 | 0.67 | 0.99685 |
Target: 5'- gGACGCCGGCGCcgagaccguggAAAGGGuGUGCc---- -3' miRNA: 3'- -CUGUGGCCGCG-----------UUUCUC-UAUGauaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 96576 | 0.67 | 0.99685 |
Target: 5'- cGACGCaGaGCGCGAucuggcccuggcAGAGAUGCUAg-- -3' miRNA: 3'- -CUGUGgC-CGCGUU------------UCUCUAUGAUaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 29909 | 0.67 | 0.997351 |
Target: 5'- cGGCGCuaccccguCGGCGCuAGGGAGGUACg---- -3' miRNA: 3'- -CUGUG--------GCCGCG-UUUCUCUAUGauaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 19493 | 0.67 | 0.99685 |
Target: 5'- gGGCAUCGGUGgCGuuGGGAGAUGCa---- -3' miRNA: 3'- -CUGUGGCCGC-GU--UUCUCUAUGauaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 145293 | 0.67 | 0.997351 |
Target: 5'- aGACGCCauaaGGUGUAGAGuuGUGCUAa-- -3' miRNA: 3'- -CUGUGG----CCGCGUUUCucUAUGAUaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 120289 | 0.68 | 0.993036 |
Target: 5'- aGGCuGCCGGCGCGAAGAcgcgcgGAaGCUGc-- -3' miRNA: 3'- -CUG-UGGCCGCGUUUCU------CUaUGAUaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 1172 | 0.68 | 0.989375 |
Target: 5'- --uGCCGGCGCGcgauGGGGGUACg---- -3' miRNA: 3'- cugUGGCCGCGUu---UCUCUAUGauaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 120199 | 0.68 | 0.989375 |
Target: 5'- --uGCCGGCGCGcgauGGGGGUACg---- -3' miRNA: 3'- cugUGGCCGCGUu---UCUCUAUGauaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 84356 | 0.7 | 0.975107 |
Target: 5'- uGCACCGGCGCGu----AUGCUAUAg -3' miRNA: 3'- cUGUGGCCGCGUuucucUAUGAUAUa -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 66691 | 0.71 | 0.950278 |
Target: 5'- cGGCGCCGG-GCGGGGGGcGUACUAc-- -3' miRNA: 3'- -CUGUGGCCgCGUUUCUC-UAUGAUaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 61924 | 0.71 | 0.95457 |
Target: 5'- gGGCGCCGccgcuuGCGCGAAGAGGaacUGCUAg-- -3' miRNA: 3'- -CUGUGGC------CGCGUUUCUCU---AUGAUaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 144300 | 0.72 | 0.940904 |
Target: 5'- uGACGCCGGCGCGcccucaggGGGAGAcgGCg---- -3' miRNA: 3'- -CUGUGGCCGCGU--------UUCUCUa-UGauaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 115943 | 0.72 | 0.935815 |
Target: 5'- aACACgCGGCGCAggcuAGGAGGUACg---- -3' miRNA: 3'- cUGUG-GCCGCGU----UUCUCUAUGauaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 16509 | 0.74 | 0.885411 |
Target: 5'- cACGCCGGCGCAGAcGGAUGgUAc-- -3' miRNA: 3'- cUGUGGCCGCGUUUcUCUAUgAUaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 149437 | 0.76 | 0.790651 |
Target: 5'- cGCGCCGGUGCGGAGAGcUGCg---- -3' miRNA: 3'- cUGUGGCCGCGUUUCUCuAUGauaua -5' |
|||||||
24744 | 5' | -48.7 | NC_005264.1 | + | 30410 | 0.76 | 0.790651 |
Target: 5'- cGCGCCGGUGCGGAGAGcUGCg---- -3' miRNA: 3'- cUGUGGCCGCGUUUCUCuAUGauaua -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home