miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24744 5' -48.7 NC_005264.1 + 87522 0.78 0.708786
Target:  5'- cGGCACUGGCGCGcGGcAGAUGCUGc-- -3'
miRNA:   3'- -CUGUGGCCGCGUuUC-UCUAUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 96576 0.67 0.99685
Target:  5'- cGACGCaGaGCGCGAucuggcccuggcAGAGAUGCUAg-- -3'
miRNA:   3'- -CUGUGgC-CGCGUU------------UCUCUAUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 96868 0.67 0.996273
Target:  5'- aGACACUaGGCGCGAgcGGAGgAUACa---- -3'
miRNA:   3'- -CUGUGG-CCGCGUU--UCUC-UAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 105691 0.66 0.998745
Target:  5'- -cCGCCGGCGCAAAGAcagACc---- -3'
miRNA:   3'- cuGUGGCCGCGUUUCUcuaUGauaua -5'
24744 5' -48.7 NC_005264.1 + 113975 0.66 0.998973
Target:  5'- aGGCACCGGCG---AGAGAUGg----- -3'
miRNA:   3'- -CUGUGGCCGCguuUCUCUAUgauaua -5'
24744 5' -48.7 NC_005264.1 + 115943 0.72 0.935815
Target:  5'- aACACgCGGCGCAggcuAGGAGGUACg---- -3'
miRNA:   3'- cUGUG-GCCGCGU----UUCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 119728 0.66 0.998156
Target:  5'- aGGCACCGcGCGUAcGAGAGAgACa---- -3'
miRNA:   3'- -CUGUGGC-CGCGU-UUCUCUaUGauaua -5'
24744 5' -48.7 NC_005264.1 + 120199 0.68 0.989375
Target:  5'- --uGCCGGCGCGcgauGGGGGUACg---- -3'
miRNA:   3'- cugUGGCCGCGUu---UCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 120289 0.68 0.993036
Target:  5'- aGGCuGCCGGCGCGAAGAcgcgcgGAaGCUGc-- -3'
miRNA:   3'- -CUG-UGGCCGCGUUUCU------CUaUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 127468 0.66 0.998156
Target:  5'- uGGCGCCGGCGCAAcuGGuuucaGCUcgAg -3'
miRNA:   3'- -CUGUGGCCGCGUUucUCua---UGAuaUa -5'
24744 5' -48.7 NC_005264.1 + 136197 0.67 0.995612
Target:  5'- cGGCGCCGGCGCcgcgcuaAGGUuCUAUAa -3'
miRNA:   3'- -CUGUGGCCGCGuuuc---UCUAuGAUAUa -5'
24744 5' -48.7 NC_005264.1 + 144268 0.67 0.995887
Target:  5'- cGACACCGaguucuccgugccgcGCGCAAacAGGGGUACg---- -3'
miRNA:   3'- -CUGUGGC---------------CGCGUU--UCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 144300 0.72 0.940904
Target:  5'- uGACGCCGGCGCGcccucaggGGGAGAcgGCg---- -3'
miRNA:   3'- -CUGUGGCCGCGU--------UUCUCUa-UGauaua -5'
24744 5' -48.7 NC_005264.1 + 145293 0.67 0.997351
Target:  5'- aGACGCCauaaGGUGUAGAGuuGUGCUAa-- -3'
miRNA:   3'- -CUGUGG----CCGCGUUUCucUAUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 147863 1.06 0.020449
Target:  5'- aGACACCGGCGCAAAGAGAUACUAUAUu -3'
miRNA:   3'- -CUGUGGCCGCGUUUCUCUAUGAUAUA- -5'
24744 5' -48.7 NC_005264.1 + 149437 0.76 0.790651
Target:  5'- cGCGCCGGUGCGGAGAGcUGCg---- -3'
miRNA:   3'- cUGUGGCCGCGUUUCUCuAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 149740 0.66 0.998156
Target:  5'- uGGCGCCGGCggGCAGAGGcGAgcCUAc-- -3'
miRNA:   3'- -CUGUGGCCG--CGUUUCU-CUauGAUaua -5'
24744 5' -48.7 NC_005264.1 + 155791 0.66 0.998973
Target:  5'- cGGCGCCGucgccgcuugcGCGCAgaauacgaaaAGGGGGUACUGg-- -3'
miRNA:   3'- -CUGUGGC-----------CGCGU----------UUCUCUAUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 157841 0.66 0.997784
Target:  5'- cGACcCCGGCGCGGAcGAGAacgACg---- -3'
miRNA:   3'- -CUGuGGCCGCGUUU-CUCUa--UGauaua -5'
24744 5' -48.7 NC_005264.1 + 160655 0.67 0.997351
Target:  5'- gGGCGCCGGCaauggagggGCAAcgccgcGGGGAUAUUAUu- -3'
miRNA:   3'- -CUGUGGCCG---------CGUU------UCUCUAUGAUAua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.