miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24744 5' -48.7 NC_005264.1 + 701 0.66 0.998156
Target:  5'- aGGCACCGcGCGUAcGAGAGAgACa---- -3'
miRNA:   3'- -CUGUGGC-CGCGU-UUCUCUaUGauaua -5'
24744 5' -48.7 NC_005264.1 + 1172 0.68 0.989375
Target:  5'- --uGCCGGCGCGcgauGGGGGUACg---- -3'
miRNA:   3'- cugUGGCCGCGUu---UCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 8441 0.66 0.998156
Target:  5'- uGGCGCCGGCGCAAcuGGuuucaGCUcgAg -3'
miRNA:   3'- -CUGUGGCCGCGUUucUCua---UGAuaUa -5'
24744 5' -48.7 NC_005264.1 + 9936 0.66 0.997784
Target:  5'- -uUugCGGCGCGcuGAGA-GCUAUAc -3'
miRNA:   3'- cuGugGCCGCGUuuCUCUaUGAUAUa -5'
24744 5' -48.7 NC_005264.1 + 16509 0.74 0.885411
Target:  5'- cACGCCGGCGCAGAcGGAUGgUAc-- -3'
miRNA:   3'- cUGUGGCCGCGUUUcUCUAUgAUaua -5'
24744 5' -48.7 NC_005264.1 + 18552 0.66 0.997784
Target:  5'- cGCGCCGGCGuCAGucGGAGcgGCa---- -3'
miRNA:   3'- cUGUGGCCGC-GUU--UCUCuaUGauaua -5'
24744 5' -48.7 NC_005264.1 + 19493 0.67 0.99685
Target:  5'- gGGCAUCGGUGgCGuuGGGAGAUGCa---- -3'
miRNA:   3'- -CUGUGGCCGC-GU--UUCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 21570 0.67 0.99685
Target:  5'- gGACGCCGGCGCcgagaccguggAAAGGGuGUGCc---- -3'
miRNA:   3'- -CUGUGGCCGCG-----------UUUCUC-UAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 28108 0.67 0.996334
Target:  5'- cGCACCGGCGCcuaucgugGCUAUGUa -3'
miRNA:   3'- cUGUGGCCGCGuuucucuaUGAUAUA- -5'
24744 5' -48.7 NC_005264.1 + 29258 0.66 0.997784
Target:  5'- aGACugCGGCGCGcAGAuuguuggACUGUGc -3'
miRNA:   3'- -CUGugGCCGCGUuUCUcua----UGAUAUa -5'
24744 5' -48.7 NC_005264.1 + 29909 0.67 0.997351
Target:  5'- cGGCGCuaccccguCGGCGCuAGGGAGGUACg---- -3'
miRNA:   3'- -CUGUG--------GCCGCG-UUUCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 30410 0.76 0.790651
Target:  5'- cGCGCCGGUGCGGAGAGcUGCg---- -3'
miRNA:   3'- cUGUGGCCGCGUUUCUCuAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 36765 0.66 0.998973
Target:  5'- cGGCGCCGucgccgcuugcGCGCAgaauacgaaaAGGGGGUACUGg-- -3'
miRNA:   3'- -CUGUGGC-----------CGCGU----------UUCUCUAUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 38815 0.66 0.997784
Target:  5'- cGACcCCGGCGCGGAcGAGAacgACg---- -3'
miRNA:   3'- -CUGuGGCCGCGUUU-CUCUa--UGauaua -5'
24744 5' -48.7 NC_005264.1 + 42159 0.66 0.998474
Target:  5'- aGGCGCUGGCGUAacgcccggaAAGAGAUGg----- -3'
miRNA:   3'- -CUGUGGCCGCGU---------UUCUCUAUgauaua -5'
24744 5' -48.7 NC_005264.1 + 43199 0.66 0.997784
Target:  5'- cGACgcggGCCGGCGgGGGGGGGggggGCUAc-- -3'
miRNA:   3'- -CUG----UGGCCGCgUUUCUCUa---UGAUaua -5'
24744 5' -48.7 NC_005264.1 + 50997 0.66 0.998973
Target:  5'- cGGCAgCGGUGCGGA-AGAUACUc--- -3'
miRNA:   3'- -CUGUgGCCGCGUUUcUCUAUGAuaua -5'
24744 5' -48.7 NC_005264.1 + 61924 0.71 0.95457
Target:  5'- gGGCGCCGccgcuuGCGCGAAGAGGaacUGCUAg-- -3'
miRNA:   3'- -CUGUGGC------CGCGUUUCUCU---AUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 66691 0.71 0.950278
Target:  5'- cGGCGCCGG-GCGGGGGGcGUACUAc-- -3'
miRNA:   3'- -CUGUGGCCgCGUUUCUC-UAUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 84356 0.7 0.975107
Target:  5'- uGCACCGGCGCGu----AUGCUAUAg -3'
miRNA:   3'- cUGUGGCCGCGUuucucUAUGAUAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.