miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24744 5' -48.7 NC_005264.1 + 155791 0.66 0.998973
Target:  5'- cGGCGCCGucgccgcuugcGCGCAgaauacgaaaAGGGGGUACUGg-- -3'
miRNA:   3'- -CUGUGGC-----------CGCGU----------UUCUCUAUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 9936 0.66 0.997784
Target:  5'- -uUugCGGCGCGcuGAGA-GCUAUAc -3'
miRNA:   3'- cuGugGCCGCGUuuCUCUaUGAUAUa -5'
24744 5' -48.7 NC_005264.1 + 162226 0.66 0.997784
Target:  5'- cGACgcggGCCGGCGgGGGGGGGggggGCUAc-- -3'
miRNA:   3'- -CUG----UGGCCGCgUUUCUCUa---UGAUaua -5'
24744 5' -48.7 NC_005264.1 + 119728 0.66 0.998156
Target:  5'- aGGCACCGcGCGUAcGAGAGAgACa---- -3'
miRNA:   3'- -CUGUGGC-CGCGU-UUCUCUaUGauaua -5'
24744 5' -48.7 NC_005264.1 + 127468 0.66 0.998156
Target:  5'- uGGCGCCGGCGCAAcuGGuuucaGCUcgAg -3'
miRNA:   3'- -CUGUGGCCGCGUUucUCua---UGAuaUa -5'
24744 5' -48.7 NC_005264.1 + 161186 0.66 0.998474
Target:  5'- aGGCGCUGGCGUAacgcccggaAAGAGAUGg----- -3'
miRNA:   3'- -CUGUGGCCGCGU---------UUCUCUAUgauaua -5'
24744 5' -48.7 NC_005264.1 + 105691 0.66 0.998745
Target:  5'- -cCGCCGGCGCAAAGAcagACc---- -3'
miRNA:   3'- cuGUGGCCGCGUUUCUcuaUGauaua -5'
24744 5' -48.7 NC_005264.1 + 50997 0.66 0.998973
Target:  5'- cGGCAgCGGUGCGGA-AGAUACUc--- -3'
miRNA:   3'- -CUGUgGCCGCGUUUcUCUAUGAuaua -5'
24744 5' -48.7 NC_005264.1 + 113975 0.66 0.998973
Target:  5'- aGGCACCGGCG---AGAGAUGg----- -3'
miRNA:   3'- -CUGUGGCCGCguuUCUCUAUgauaua -5'
24744 5' -48.7 NC_005264.1 + 157841 0.66 0.997784
Target:  5'- cGACcCCGGCGCGGAcGAGAacgACg---- -3'
miRNA:   3'- -CUGuGGCCGCGUUU-CUCUa--UGauaua -5'
24744 5' -48.7 NC_005264.1 + 18552 0.66 0.997784
Target:  5'- cGCGCCGGCGuCAGucGGAGcgGCa---- -3'
miRNA:   3'- cUGUGGCCGC-GUU--UCUCuaUGauaua -5'
24744 5' -48.7 NC_005264.1 + 29909 0.67 0.997351
Target:  5'- cGGCGCuaccccguCGGCGCuAGGGAGGUACg---- -3'
miRNA:   3'- -CUGUG--------GCCGCG-UUUCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 87522 0.78 0.708786
Target:  5'- cGGCACUGGCGCGcGGcAGAUGCUGc-- -3'
miRNA:   3'- -CUGUGGCCGCGUuUC-UCUAUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 149437 0.76 0.790651
Target:  5'- cGCGCCGGUGCGGAGAGcUGCg---- -3'
miRNA:   3'- cUGUGGCCGCGUUUCUCuAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 115943 0.72 0.935815
Target:  5'- aACACgCGGCGCAggcuAGGAGGUACg---- -3'
miRNA:   3'- cUGUG-GCCGCGU----UUCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 84356 0.7 0.975107
Target:  5'- uGCACCGGCGCGu----AUGCUAUAg -3'
miRNA:   3'- cUGUGGCCGCGUuucucUAUGAUAUa -5'
24744 5' -48.7 NC_005264.1 + 120199 0.68 0.989375
Target:  5'- --uGCCGGCGCGcgauGGGGGUACg---- -3'
miRNA:   3'- cugUGGCCGCGUu---UCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 144268 0.67 0.995887
Target:  5'- cGACACCGaguucuccgugccgcGCGCAAacAGGGGUACg---- -3'
miRNA:   3'- -CUGUGGC---------------CGCGUU--UCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 96868 0.67 0.996273
Target:  5'- aGACACUaGGCGCGAgcGGAGgAUACa---- -3'
miRNA:   3'- -CUGUGG-CCGCGUU--UCUC-UAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 21570 0.67 0.99685
Target:  5'- gGACGCCGGCGCcgagaccguggAAAGGGuGUGCc---- -3'
miRNA:   3'- -CUGUGGCCGCG-----------UUUCUC-UAUGauaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.