miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24744 5' -48.7 NC_005264.1 + 147863 1.06 0.020449
Target:  5'- aGACACCGGCGCAAAGAGAUACUAUAUu -3'
miRNA:   3'- -CUGUGGCCGCGUUUCUCUAUGAUAUA- -5'
24744 5' -48.7 NC_005264.1 + 87522 0.78 0.708786
Target:  5'- cGGCACUGGCGCGcGGcAGAUGCUGc-- -3'
miRNA:   3'- -CUGUGGCCGCGUuUC-UCUAUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 30410 0.76 0.790651
Target:  5'- cGCGCCGGUGCGGAGAGcUGCg---- -3'
miRNA:   3'- cUGUGGCCGCGUUUCUCuAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 149437 0.76 0.790651
Target:  5'- cGCGCCGGUGCGGAGAGcUGCg---- -3'
miRNA:   3'- cUGUGGCCGCGUUUCUCuAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 16509 0.74 0.885411
Target:  5'- cACGCCGGCGCAGAcGGAUGgUAc-- -3'
miRNA:   3'- cUGUGGCCGCGUUUcUCUAUgAUaua -5'
24744 5' -48.7 NC_005264.1 + 115943 0.72 0.935815
Target:  5'- aACACgCGGCGCAggcuAGGAGGUACg---- -3'
miRNA:   3'- cUGUG-GCCGCGU----UUCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 144300 0.72 0.940904
Target:  5'- uGACGCCGGCGCGcccucaggGGGAGAcgGCg---- -3'
miRNA:   3'- -CUGUGGCCGCGU--------UUCUCUa-UGauaua -5'
24744 5' -48.7 NC_005264.1 + 66691 0.71 0.950278
Target:  5'- cGGCGCCGG-GCGGGGGGcGUACUAc-- -3'
miRNA:   3'- -CUGUGGCCgCGUUUCUC-UAUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 61924 0.71 0.95457
Target:  5'- gGGCGCCGccgcuuGCGCGAAGAGGaacUGCUAg-- -3'
miRNA:   3'- -CUGUGGC------CGCGUUUCUCU---AUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 84356 0.7 0.975107
Target:  5'- uGCACCGGCGCGu----AUGCUAUAg -3'
miRNA:   3'- cUGUGGCCGCGUuucucUAUGAUAUa -5'
24744 5' -48.7 NC_005264.1 + 1172 0.68 0.989375
Target:  5'- --uGCCGGCGCGcgauGGGGGUACg---- -3'
miRNA:   3'- cugUGGCCGCGUu---UCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 120199 0.68 0.989375
Target:  5'- --uGCCGGCGCGcgauGGGGGUACg---- -3'
miRNA:   3'- cugUGGCCGCGUu---UCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 120289 0.68 0.993036
Target:  5'- aGGCuGCCGGCGCGAAGAcgcgcgGAaGCUGc-- -3'
miRNA:   3'- -CUG-UGGCCGCGUUUCU------CUaUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 136197 0.67 0.995612
Target:  5'- cGGCGCCGGCGCcgcgcuaAGGUuCUAUAa -3'
miRNA:   3'- -CUGUGGCCGCGuuuc---UCUAuGAUAUa -5'
24744 5' -48.7 NC_005264.1 + 144268 0.67 0.995887
Target:  5'- cGACACCGaguucuccgugccgcGCGCAAacAGGGGUACg---- -3'
miRNA:   3'- -CUGUGGC---------------CGCGUU--UCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 96868 0.67 0.996273
Target:  5'- aGACACUaGGCGCGAgcGGAGgAUACa---- -3'
miRNA:   3'- -CUGUGG-CCGCGUU--UCUC-UAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 28108 0.67 0.996334
Target:  5'- cGCACCGGCGCcuaucgugGCUAUGUa -3'
miRNA:   3'- cUGUGGCCGCGuuucucuaUGAUAUA- -5'
24744 5' -48.7 NC_005264.1 + 96576 0.67 0.99685
Target:  5'- cGACGCaGaGCGCGAucuggcccuggcAGAGAUGCUAg-- -3'
miRNA:   3'- -CUGUGgC-CGCGUU------------UCUCUAUGAUaua -5'
24744 5' -48.7 NC_005264.1 + 19493 0.67 0.99685
Target:  5'- gGGCAUCGGUGgCGuuGGGAGAUGCa---- -3'
miRNA:   3'- -CUGUGGCCGC-GU--UUCUCUAUGauaua -5'
24744 5' -48.7 NC_005264.1 + 21570 0.67 0.99685
Target:  5'- gGACGCCGGCGCcgagaccguggAAAGGGuGUGCc---- -3'
miRNA:   3'- -CUGUGGCCGCG-----------UUUCUC-UAUGauaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.