miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24746 3' -57.5 NC_005264.1 + 162067 0.66 0.8883
Target:  5'- aCCgcaagaaCCGuGUCGcGUAGGGGcuCCGCCg -3'
miRNA:   3'- aGGa------GGCuCAGC-CAUCUCCu-GGUGGa -5'
24746 3' -57.5 NC_005264.1 + 98633 0.66 0.852317
Target:  5'- aUCCgcaaggCCGAGUCGGaaguGGGGuuCCugCUc -3'
miRNA:   3'- -AGGa-----GGCUCAGCCau--CUCCu-GGugGA- -5'
24746 3' -57.5 NC_005264.1 + 60952 0.66 0.874526
Target:  5'- gUUCUCCGccguguucguguGGUUGGUGGucgcGGugUACCUg -3'
miRNA:   3'- -AGGAGGC------------UCAGCCAUCu---CCugGUGGA- -5'
24746 3' -57.5 NC_005264.1 + 38854 0.66 0.874526
Target:  5'- aCCgugCCGAGUCGGUGacgcgucACCGCCa -3'
miRNA:   3'- aGGa--GGCUCAGCCAUcucc---UGGUGGa -5'
24746 3' -57.5 NC_005264.1 + 157880 0.66 0.874526
Target:  5'- aCCgugCCGAGUCGGUGacgcgucACCGCCa -3'
miRNA:   3'- aGGa--GGCUCAGCCAUcucc---UGGUGGa -5'
24746 3' -57.5 NC_005264.1 + 32485 0.66 0.866592
Target:  5'- gUCUUgCCGAucccaaaugccccGUCGacGUAGAGGACCACg- -3'
miRNA:   3'- -AGGA-GGCU-------------CAGC--CAUCUCCUGGUGga -5'
24746 3' -57.5 NC_005264.1 + 80025 0.67 0.836544
Target:  5'- aUCUCCG-GUUGGagcgGGGGaGACCACUg -3'
miRNA:   3'- aGGAGGCuCAGCCa---UCUC-CUGGUGGa -5'
24746 3' -57.5 NC_005264.1 + 121848 0.68 0.802917
Target:  5'- aCCUaaaCGGGUUGGcGGAGGGCCggucgcgcucgcGCCg -3'
miRNA:   3'- aGGAg--GCUCAGCCaUCUCCUGG------------UGGa -5'
24746 3' -57.5 NC_005264.1 + 2822 0.68 0.802917
Target:  5'- aCCUaaaCGGGUUGGcGGAGGGCCggucgcgcucgcGCCg -3'
miRNA:   3'- aGGAg--GCUCAGCCaUCUCCUGG------------UGGa -5'
24746 3' -57.5 NC_005264.1 + 4738 0.68 0.757611
Target:  5'- cCCgCCGAGcCGGcguccgggGGuGGACCGCCg -3'
miRNA:   3'- aGGaGGCUCaGCCa-------UCuCCUGGUGGa -5'
24746 3' -57.5 NC_005264.1 + 49802 0.68 0.757611
Target:  5'- aCCUCCGcGUCgaGGUGcAGGGCCGCg- -3'
miRNA:   3'- aGGAGGCuCAG--CCAUcUCCUGGUGga -5'
24746 3' -57.5 NC_005264.1 + 123764 0.68 0.757611
Target:  5'- cCCgCCGAGcCGGcguccgggGGuGGACCGCCg -3'
miRNA:   3'- aGGaGGCUCaGCCa-------UCuCCUGGUGGa -5'
24746 3' -57.5 NC_005264.1 + 29476 0.69 0.729082
Target:  5'- cUCUcgCCGAGUCGucgaGGAGGGCCGCg- -3'
miRNA:   3'- -AGGa-GGCUCAGCca--UCUCCUGGUGga -5'
24746 3' -57.5 NC_005264.1 + 118885 0.7 0.650093
Target:  5'- aCCgUUCGGG-CGGUAGGGccuGACCACCg -3'
miRNA:   3'- aGG-AGGCUCaGCCAUCUC---CUGGUGGa -5'
24746 3' -57.5 NC_005264.1 + 37378 0.7 0.670085
Target:  5'- gCCUCCGAGcagggcgCGGcAGAGGgACCGCa- -3'
miRNA:   3'- aGGAGGCUCa------GCCaUCUCC-UGGUGga -5'
24746 3' -57.5 NC_005264.1 + 158046 0.83 0.140695
Target:  5'- gCUUCUGAGUCGGUGGAGGugCGCg- -3'
miRNA:   3'- aGGAGGCUCAGCCAUCUCCugGUGga -5'
24746 3' -57.5 NC_005264.1 + 149592 1.08 0.002681
Target:  5'- gUCCUCCGAGUCGGUAGAGGACCACCUg -3'
miRNA:   3'- -AGGAGGCUCAGCCAUCUCCUGGUGGA- -5'
24746 3' -57.5 NC_005264.1 + 30565 1.08 0.002681
Target:  5'- gUCCUCCGAGUCGGUAGAGGACCACCUg -3'
miRNA:   3'- -AGGAGGCUCAGCCAUCUCCUGGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.