Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24746 | 3' | -57.5 | NC_005264.1 | + | 149592 | 1.08 | 0.002681 |
Target: 5'- gUCCUCCGAGUCGGUAGAGGACCACCUg -3' miRNA: 3'- -AGGAGGCUCAGCCAUCUCCUGGUGGA- -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 30565 | 1.08 | 0.002681 |
Target: 5'- gUCCUCCGAGUCGGUAGAGGACCACCUg -3' miRNA: 3'- -AGGAGGCUCAGCCAUCUCCUGGUGGA- -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 158046 | 0.83 | 0.140695 |
Target: 5'- gCUUCUGAGUCGGUGGAGGugCGCg- -3' miRNA: 3'- aGGAGGCUCAGCCAUCUCCugGUGga -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 118885 | 0.7 | 0.650093 |
Target: 5'- aCCgUUCGGG-CGGUAGGGccuGACCACCg -3' miRNA: 3'- aGG-AGGCUCaGCCAUCUC---CUGGUGGa -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 37378 | 0.7 | 0.670085 |
Target: 5'- gCCUCCGAGcagggcgCGGcAGAGGgACCGCa- -3' miRNA: 3'- aGGAGGCUCa------GCCaUCUCC-UGGUGga -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 29476 | 0.69 | 0.729082 |
Target: 5'- cUCUcgCCGAGUCGucgaGGAGGGCCGCg- -3' miRNA: 3'- -AGGa-GGCUCAGCca--UCUCCUGGUGga -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 123764 | 0.68 | 0.757611 |
Target: 5'- cCCgCCGAGcCGGcguccgggGGuGGACCGCCg -3' miRNA: 3'- aGGaGGCUCaGCCa-------UCuCCUGGUGGa -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 121848 | 0.68 | 0.802917 |
Target: 5'- aCCUaaaCGGGUUGGcGGAGGGCCggucgcgcucgcGCCg -3' miRNA: 3'- aGGAg--GCUCAGCCaUCUCCUGG------------UGGa -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 49802 | 0.68 | 0.757611 |
Target: 5'- aCCUCCGcGUCgaGGUGcAGGGCCGCg- -3' miRNA: 3'- aGGAGGCuCAG--CCAUcUCCUGGUGga -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 4738 | 0.68 | 0.757611 |
Target: 5'- cCCgCCGAGcCGGcguccgggGGuGGACCGCCg -3' miRNA: 3'- aGGaGGCUCaGCCa-------UCuCCUGGUGGa -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 2822 | 0.68 | 0.802917 |
Target: 5'- aCCUaaaCGGGUUGGcGGAGGGCCggucgcgcucgcGCCg -3' miRNA: 3'- aGGAg--GCUCAGCCaUCUCCUGG------------UGGa -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 80025 | 0.67 | 0.836544 |
Target: 5'- aUCUCCG-GUUGGagcgGGGGaGACCACUg -3' miRNA: 3'- aGGAGGCuCAGCCa---UCUC-CUGGUGGa -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 98633 | 0.66 | 0.852317 |
Target: 5'- aUCCgcaaggCCGAGUCGGaaguGGGGuuCCugCUc -3' miRNA: 3'- -AGGa-----GGCUCAGCCau--CUCCu-GGugGA- -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 60952 | 0.66 | 0.874526 |
Target: 5'- gUUCUCCGccguguucguguGGUUGGUGGucgcGGugUACCUg -3' miRNA: 3'- -AGGAGGC------------UCAGCCAUCu---CCugGUGGA- -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 38854 | 0.66 | 0.874526 |
Target: 5'- aCCgugCCGAGUCGGUGacgcgucACCGCCa -3' miRNA: 3'- aGGa--GGCUCAGCCAUcucc---UGGUGGa -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 157880 | 0.66 | 0.874526 |
Target: 5'- aCCgugCCGAGUCGGUGacgcgucACCGCCa -3' miRNA: 3'- aGGa--GGCUCAGCCAUcucc---UGGUGGa -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 32485 | 0.66 | 0.866592 |
Target: 5'- gUCUUgCCGAucccaaaugccccGUCGacGUAGAGGACCACg- -3' miRNA: 3'- -AGGA-GGCU-------------CAGC--CAUCUCCUGGUGga -5' |
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24746 | 3' | -57.5 | NC_005264.1 | + | 162067 | 0.66 | 0.8883 |
Target: 5'- aCCgcaagaaCCGuGUCGcGUAGGGGcuCCGCCg -3' miRNA: 3'- aGGa------GGCuCAGC-CAUCUCCu-GGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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