miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24746 5' -62.1 NC_005264.1 + 7055 0.66 0.646454
Target:  5'- ---cAAGCGGCgaCGGCGcCGGCcGGCGc -3'
miRNA:   3'- ccucUUCGUCGg-GCCGCuGCCG-CCGC- -5'
24746 5' -62.1 NC_005264.1 + 155250 0.66 0.646454
Target:  5'- uGAGGaagcaucuccgcAGCGGCgCGGgguaGGCGGCGGgGa -3'
miRNA:   3'- cCUCU------------UCGUCGgGCCg---CUGCCGCCgC- -5'
24746 5' -62.1 NC_005264.1 + 126082 0.66 0.646454
Target:  5'- ---cAAGCGGCgaCGGCGcCGGCcGGCGc -3'
miRNA:   3'- ccucUUCGUCGg-GCCGCuGCCG-CCGC- -5'
24746 5' -62.1 NC_005264.1 + 45386 0.67 0.627027
Target:  5'- aGGAGAA--GGCgCGGCaaacgaugGAgGGCGGCGc -3'
miRNA:   3'- -CCUCUUcgUCGgGCCG--------CUgCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 15718 0.67 0.627027
Target:  5'- uGGaAGAAGCAagaaCgCGGC-ACGGCGGCc -3'
miRNA:   3'- -CC-UCUUCGUc---GgGCCGcUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 162659 0.67 0.617316
Target:  5'- -cGGAAGC-GCgCCGGCGggucguagguguACGGuCGGCGc -3'
miRNA:   3'- ccUCUUCGuCG-GGCCGC------------UGCC-GCCGC- -5'
24746 5' -62.1 NC_005264.1 + 70398 0.67 0.617316
Target:  5'- uGGAG-GGCGGCCUGaCGAgacCGuGCGGCu -3'
miRNA:   3'- -CCUCuUCGUCGGGCcGCU---GC-CGCCGc -5'
24746 5' -62.1 NC_005264.1 + 93073 0.67 0.617316
Target:  5'- -cGGGAGgGGCCgCGGCGACcuCGGCu -3'
miRNA:   3'- ccUCUUCgUCGG-GCCGCUGccGCCGc -5'
24746 5' -62.1 NC_005264.1 + 151846 0.67 0.617316
Target:  5'- uGGGGccGCcGCuCCGGCGGCgacacgugGGgGGCGu -3'
miRNA:   3'- -CCUCuuCGuCG-GGCCGCUG--------CCgCCGC- -5'
24746 5' -62.1 NC_005264.1 + 152357 0.67 0.617316
Target:  5'- cGGGGAGGaaCAGCUUuacuacauUGACGGCGGCGg -3'
miRNA:   3'- -CCUCUUC--GUCGGGcc------GCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 80612 0.67 0.616345
Target:  5'- gGGGGGAGCguucuugGGCCCcgaGGaCGAUGGaCGcGCGg -3'
miRNA:   3'- -CCUCUUCG-------UCGGG---CC-GCUGCC-GC-CGC- -5'
24746 5' -62.1 NC_005264.1 + 154608 0.67 0.616345
Target:  5'- gGGGGGAGCuGCUgcggcuuCGGcCGAUGGCcGCGu -3'
miRNA:   3'- -CCUCUUCGuCGG-------GCC-GCUGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 35581 0.67 0.616345
Target:  5'- gGGGGGAGCuGCUgcggcuuCGGcCGAUGGCcGCGu -3'
miRNA:   3'- -CCUCUUCGuCGG-------GCC-GCUGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 30517 0.67 0.607615
Target:  5'- cGGGAAGCGGCUCucgcgcaguuuGGcCGACcGCGGUGu -3'
miRNA:   3'- cCUCUUCGUCGGG-----------CC-GCUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 123611 0.67 0.607615
Target:  5'- cGGGAAcGCAGgcccucCCCGccaGCGccGCGGCGGCGu -3'
miRNA:   3'- cCUCUU-CGUC------GGGC---CGC--UGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 602 0.67 0.607615
Target:  5'- ----cGGCAGCgaGGCGAcuaCGGUGGCGu -3'
miRNA:   3'- ccucuUCGUCGggCCGCU---GCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 104041 0.67 0.607615
Target:  5'- uGGAGAGGUuuuucGGCCUcagGGgGGCGGUcgacgauuacGGCGa -3'
miRNA:   3'- -CCUCUUCG-----UCGGG---CCgCUGCCG----------CCGC- -5'
24746 5' -62.1 NC_005264.1 + 82180 0.67 0.607615
Target:  5'- -----uGCGG-CCGGuCGGCGGCGGCc -3'
miRNA:   3'- ccucuuCGUCgGGCC-GCUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 97518 0.67 0.607615
Target:  5'- -cAGGAGCuGCCgCGGCuGugGcGUGGCa -3'
miRNA:   3'- ccUCUUCGuCGG-GCCG-CugC-CGCCGc -5'
24746 5' -62.1 NC_005264.1 + 111409 0.67 0.607615
Target:  5'- uGAGGA-CGGagggGGCGACGGCGGCu -3'
miRNA:   3'- cCUCUUcGUCggg-CCGCUGCCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.