Results 21 - 40 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24746 | 5' | -62.1 | NC_005264.1 | + | 152281 | 0.66 | 0.684165 |
Target: 5'- -aGGAAGCAGCggcgaaCGcGCGAUccgcgccccugagGGCGGCGc -3' miRNA: 3'- ccUCUUCGUCGg-----GC-CGCUG-------------CCGCCGC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 34069 | 0.66 | 0.682242 |
Target: 5'- cGAGAAGaaggaAGCCCGcaguuugccGCGGCGggcacaauggcucaGCGGCGc -3' miRNA: 3'- cCUCUUCg----UCGGGC---------CGCUGC--------------CGCCGC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 153096 | 0.66 | 0.682242 |
Target: 5'- cGAGAAGaaggaAGCCCGcaguuugccGCGGCGggcacaauggcucaGCGGCGc -3' miRNA: 3'- cCUCUUCg----UCGGGC---------CGCUGC--------------CGCCGC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 154804 | 0.66 | 0.675498 |
Target: 5'- -aAGAGGCGGag-GGCG-CGGUGGCGc -3' miRNA: 3'- ccUCUUCGUCgggCCGCuGCCGCCGC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 35778 | 0.66 | 0.675498 |
Target: 5'- -aAGAGGCGGag-GGCG-CGGUGGCGc -3' miRNA: 3'- ccUCUUCGUCgggCCGCuGCCGCCGC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 110312 | 0.66 | 0.675498 |
Target: 5'- aGAGAGGacacuaacacCAGCCUGuuCGACGGCGuGCa -3' miRNA: 3'- cCUCUUC----------GUCGGGCc-GCUGCCGC-CGc -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 83714 | 0.66 | 0.675498 |
Target: 5'- cGGuGGcGGCGGCuaGGUacGCGGCGGCa -3' miRNA: 3'- -CCuCU-UCGUCGggCCGc-UGCCGCCGc -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 126287 | 0.66 | 0.665839 |
Target: 5'- cGGAGGucGGC-GCCaGGacgaaGACGGCGGgGc -3' miRNA: 3'- -CCUCU--UCGuCGGgCCg----CUGCCGCCgC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 7260 | 0.66 | 0.665839 |
Target: 5'- cGGAGGucGGC-GCCaGGacgaaGACGGCGGgGc -3' miRNA: 3'- -CCUCU--UCGuCGGgCCg----CUGCCGCCgC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 66723 | 0.66 | 0.665839 |
Target: 5'- cGGGGAGCaacaAGCgCCGGCGccuaaACcGCGGCa -3' miRNA: 3'- cCUCUUCG----UCG-GGCCGC-----UGcCGCCGc -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 57872 | 0.66 | 0.665839 |
Target: 5'- aGAGAcGGCGGCaCGGCGGCcauGGC-GCGg -3' miRNA: 3'- cCUCU-UCGUCGgGCCGCUG---CCGcCGC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 120730 | 0.66 | 0.665839 |
Target: 5'- cGGAGGA-CGGUgCCGGCGACuGCGaCGa -3' miRNA: 3'- -CCUCUUcGUCG-GGCCGCUGcCGCcGC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 40950 | 0.66 | 0.656155 |
Target: 5'- cGGucGAucGCAGCCgcagcgGGCGACGGC-GCGa -3' miRNA: 3'- -CCu-CUu-CGUCGGg-----CCGCUGCCGcCGC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 39081 | 0.66 | 0.656155 |
Target: 5'- -cGGAcGcCGGCUCGGCgGGCaGCGGCGu -3' miRNA: 3'- ccUCUuC-GUCGGGCCG-CUGcCGCCGC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 158108 | 0.66 | 0.656155 |
Target: 5'- -cGGAcGcCGGCUCGGCgGGCaGCGGCGu -3' miRNA: 3'- ccUCUuC-GUCGGGCCG-CUGcCGCCGC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 159977 | 0.66 | 0.656155 |
Target: 5'- cGGucGAucGCAGCCgcagcgGGCGACGGC-GCGa -3' miRNA: 3'- -CCu-CUu-CGUCGGg-----CCGCUGCCGcCGC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 59458 | 0.66 | 0.646454 |
Target: 5'- ---aAAGCGGCCCcGCG-CGGCaGGCa -3' miRNA: 3'- ccucUUCGUCGGGcCGCuGCCG-CCGc -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 128896 | 0.66 | 0.646454 |
Target: 5'- -cGGgcGCGGuCCCGGCGcgccACGGCcuucccagcccuGGCGg -3' miRNA: 3'- ccUCuuCGUC-GGGCCGC----UGCCG------------CCGC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 126082 | 0.66 | 0.646454 |
Target: 5'- ---cAAGCGGCgaCGGCGcCGGCcGGCGc -3' miRNA: 3'- ccucUUCGUCGg-GCCGCuGCCG-CCGC- -5' |
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24746 | 5' | -62.1 | NC_005264.1 | + | 155250 | 0.66 | 0.646454 |
Target: 5'- uGAGGaagcaucuccgcAGCGGCgCGGgguaGGCGGCGGgGa -3' miRNA: 3'- cCUCU------------UCGUCGgGCCg---CUGCCGCCgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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