miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24746 5' -62.1 NC_005264.1 + 16901 0.74 0.271543
Target:  5'- aGAGAAauucccGuCGGCCgCGGaCGAUGGCGGCGg -3'
miRNA:   3'- cCUCUU------C-GUCGG-GCC-GCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 17359 0.66 0.694714
Target:  5'- --cGcGGCAG-CUGGCGGCGGC-GCGg -3'
miRNA:   3'- ccuCuUCGUCgGGCCGCUGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 17681 0.72 0.323861
Target:  5'- -cAGgcGCAGCCgaGGCcGCGGCGGCu -3'
miRNA:   3'- ccUCuuCGUCGGg-CCGcUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 17769 0.66 0.693757
Target:  5'- aGGAG-AGCuGCCCGGCccggcuucuaGAgcgccaagguaccUGGCGGUa -3'
miRNA:   3'- -CCUCuUCGuCGGGCCG----------CU-------------GCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 17983 0.73 0.303403
Target:  5'- cGAGcgcguucaAAGcCGGCaCCGGCucuGACGGCGGCGg -3'
miRNA:   3'- cCUC--------UUC-GUCG-GGCCG---CUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 19415 0.68 0.559477
Target:  5'- gGGGGAGGCGaggcGCCgGGUGugGccGCGGgGc -3'
miRNA:   3'- -CCUCUUCGU----CGGgCCGCugC--CGCCgC- -5'
24746 5' -62.1 NC_005264.1 + 20227 0.79 0.130405
Target:  5'- aGGcGAGGUAGCCCGGCGuggccaucgucGCGGcCGGCa -3'
miRNA:   3'- -CCuCUUCGUCGGGCCGC-----------UGCC-GCCGc -5'
24746 5' -62.1 NC_005264.1 + 20436 0.7 0.423167
Target:  5'- --cGAAGCAGCaaugugggcguagCCGGCgGACaGCGGCGc -3'
miRNA:   3'- ccuCUUCGUCG-------------GGCCG-CUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 21740 0.66 0.685126
Target:  5'- uGGAGu-GgGGCCUu-CGGCGGCGGCc -3'
miRNA:   3'- -CCUCuuCgUCGGGccGCUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 25574 0.68 0.563296
Target:  5'- aGGGGAgcucuggcccauGGCcaaaugaauagcgccGGgCCGGCGuugcggaacACGGCGGCGg -3'
miRNA:   3'- -CCUCU------------UCG---------------UCgGGCCGC---------UGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 27149 0.66 0.685126
Target:  5'- cGAGGGcCGGCCCGuccGUGcaggccgucuucACGGCGGCGc -3'
miRNA:   3'- cCUCUUcGUCGGGC---CGC------------UGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 29134 0.74 0.271543
Target:  5'- -cAGAGGCAGCaCCaGUGcGCGGCGGCa -3'
miRNA:   3'- ccUCUUCGUCG-GGcCGC-UGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 30110 0.66 0.685126
Target:  5'- cGAGAugcgGGCGGCgCGGCaccgaGCuGCGGCGc -3'
miRNA:   3'- cCUCU----UCGUCGgGCCGc----UGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 30385 0.68 0.540501
Target:  5'- --cGucGCGuCUCGGCGGCGGCGGUc -3'
miRNA:   3'- ccuCuuCGUcGGGCCGCUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 30517 0.67 0.607615
Target:  5'- cGGGAAGCGGCUCucgcgcaguuuGGcCGACcGCGGUGu -3'
miRNA:   3'- cCUCUUCGUCGGG-----------CC-GCUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 30599 1.1 0.000789
Target:  5'- gGGAGAAGCAGCCCGGCGACGGCGGCGg -3'
miRNA:   3'- -CCUCUUCGUCGGGCCGCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 31586 0.68 0.568078
Target:  5'- aGGuGggGCgAGUCUgcucucuGGCGA-GGCGGCGc -3'
miRNA:   3'- -CCuCuuCG-UCGGG-------CCGCUgCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 33254 0.66 0.684165
Target:  5'- -aGGAAGCAGCggcgaaCGcGCGAUccgcgccccugagGGCGGCGc -3'
miRNA:   3'- ccUCUUCGUCGg-----GC-CGCUG-------------CCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 33600 0.66 0.684165
Target:  5'- cGGAcGAGGCuugccgccgcuaaAGUUCGGCcaGAuUGGCGGCGa -3'
miRNA:   3'- -CCU-CUUCG-------------UCGGGCCG--CU-GCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 34069 0.66 0.682242
Target:  5'- cGAGAAGaaggaAGCCCGcaguuugccGCGGCGggcacaauggcucaGCGGCGc -3'
miRNA:   3'- cCUCUUCg----UCGGGC---------CGCUGC--------------CGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.