miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24746 5' -62.1 NC_005264.1 + 385 0.73 0.316929
Target:  5'- uGGGggGCAGCgCCGGCG-CGGUcGUGu -3'
miRNA:   3'- cCUCuuCGUCG-GGCCGCuGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 602 0.67 0.607615
Target:  5'- ----cGGCAGCgaGGCGAcuaCGGUGGCGu -3'
miRNA:   3'- ccucuUCGUCGggCCGCU---GCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 2886 0.67 0.588268
Target:  5'- cGGGgcGCGGCgCGGCGgggaggGCGaCGGCGa -3'
miRNA:   3'- cCUCuuCGUCGgGCCGC------UGCcGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 3270 0.69 0.512463
Target:  5'- aGGAGccGCAGCgCCacgucccugGGCGACGGgGaGUGa -3'
miRNA:   3'- -CCUCuuCGUCG-GG---------CCGCUGCCgC-CGC- -5'
24746 5' -62.1 NC_005264.1 + 4180 0.66 0.685126
Target:  5'- uGGGGAAGCggagGGUCCGaGgGACGGgaGGUu -3'
miRNA:   3'- -CCUCUUCG----UCGGGC-CgCUGCCg-CCGc -5'
24746 5' -62.1 NC_005264.1 + 4584 0.67 0.607615
Target:  5'- cGGGAAcGCAGgcccucCCCGccaGCGccGCGGCGGCGu -3'
miRNA:   3'- cCUCUU-CGUC------GGGC---CGC--UGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 5264 0.71 0.399288
Target:  5'- cGGGGAAGCgcccaAGCCCGGCcuc-GUGGCGu -3'
miRNA:   3'- -CCUCUUCG-----UCGGGCCGcugcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 5271 0.76 0.192005
Target:  5'- cGAGucGCGGCCggaCGGCGggGCGGCGGCu -3'
miRNA:   3'- cCUCuuCGUCGG---GCCGC--UGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 5799 0.76 0.195213
Target:  5'- cGAGgcGCccacggcguucaauAGUCCGGCGGCGGUGGCc -3'
miRNA:   3'- cCUCuuCG--------------UCGGGCCGCUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 6454 0.7 0.448749
Target:  5'- cGGAGAacuccucGGCGGCgCGGCGAacgucggGGUGcGCGg -3'
miRNA:   3'- -CCUCU-------UCGUCGgGCCGCUg------CCGC-CGC- -5'
24746 5' -62.1 NC_005264.1 + 6808 0.72 0.323861
Target:  5'- aGGGGAcggucaGGguGUugCCGGaGGCGGCGGCGa -3'
miRNA:   3'- -CCUCU------UCguCG--GGCCgCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 7055 0.66 0.646454
Target:  5'- ---cAAGCGGCgaCGGCGcCGGCcGGCGc -3'
miRNA:   3'- ccucUUCGUCGg-GCCGCuGCCG-CCGC- -5'
24746 5' -62.1 NC_005264.1 + 7260 0.66 0.665839
Target:  5'- cGGAGGucGGC-GCCaGGacgaaGACGGCGGgGc -3'
miRNA:   3'- -CCUCU--UCGuCGGgCCg----CUGCCGCCgC- -5'
24746 5' -62.1 NC_005264.1 + 7867 0.66 0.704255
Target:  5'- -uGGggGCGGCgUCGGCGccccagauGCGGCGuCGg -3'
miRNA:   3'- ccUCuuCGUCG-GGCCGC--------UGCCGCcGC- -5'
24746 5' -62.1 NC_005264.1 + 8013 0.67 0.588268
Target:  5'- cGGcAGAGGC-GCCCGccaCGACGGCGccaccGCGc -3'
miRNA:   3'- -CC-UCUUCGuCGGGCc--GCUGCCGC-----CGC- -5'
24746 5' -62.1 NC_005264.1 + 8290 0.67 0.59793
Target:  5'- ---aAGGC-GCCCgugGGCGACGGgGGCa -3'
miRNA:   3'- ccucUUCGuCGGG---CCGCUGCCgCCGc -5'
24746 5' -62.1 NC_005264.1 + 9870 0.66 0.646454
Target:  5'- -cGGgcGCGGuCCCGGCGcgccACGGCcuucccagcccuGGCGg -3'
miRNA:   3'- ccUCuuCGUC-GGGCCGC----UGCCG------------CCGC- -5'
24746 5' -62.1 NC_005264.1 + 13579 0.67 0.603739
Target:  5'- cGGGGAagGGCGGaacgaagacgggaCCGGCGAUcGCGGuCGg -3'
miRNA:   3'- -CCUCU--UCGUCg------------GGCCGCUGcCGCC-GC- -5'
24746 5' -62.1 NC_005264.1 + 15718 0.67 0.627027
Target:  5'- uGGaAGAAGCAagaaCgCGGC-ACGGCGGCc -3'
miRNA:   3'- -CC-UCUUCGUc---GgGCCGcUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 16564 0.76 0.201294
Target:  5'- cGGuG-GGCGGCgCCGG-GGCGGCGGCGc -3'
miRNA:   3'- -CCuCuUCGUCG-GGCCgCUGCCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.