miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24746 5' -62.1 NC_005264.1 + 154804 0.66 0.675498
Target:  5'- -aAGAGGCGGag-GGCG-CGGUGGCGc -3'
miRNA:   3'- ccUCUUCGUCgggCCGCuGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 158108 0.66 0.656155
Target:  5'- -cGGAcGcCGGCUCGGCgGGCaGCGGCGu -3'
miRNA:   3'- ccUCUuC-GUCGGGCCG-CUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 126082 0.66 0.646454
Target:  5'- ---cAAGCGGCgaCGGCGcCGGCcGGCGc -3'
miRNA:   3'- ccucUUCGUCGg-GCCGCuGCCG-CCGC- -5'
24746 5' -62.1 NC_005264.1 + 123207 0.66 0.685126
Target:  5'- uGGGGAAGCggagGGUCCGaGgGACGGgaGGUu -3'
miRNA:   3'- -CCUCUUCG----UCGGGC-CgCUGCCg-CCGc -5'
24746 5' -62.1 NC_005264.1 + 128896 0.66 0.646454
Target:  5'- -cGGgcGCGGuCCCGGCGcgccACGGCcuucccagcccuGGCGg -3'
miRNA:   3'- ccUCuuCGUC-GGGCCGC----UGCCG------------CCGC- -5'
24746 5' -62.1 NC_005264.1 + 153096 0.66 0.682242
Target:  5'- cGAGAAGaaggaAGCCCGcaguuugccGCGGCGggcacaauggcucaGCGGCGc -3'
miRNA:   3'- cCUCUUCg----UCGGGC---------CGCUGC--------------CGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 17359 0.66 0.694714
Target:  5'- --cGcGGCAG-CUGGCGGCGGC-GCGg -3'
miRNA:   3'- ccuCuUCGUCgGGCCGCUGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 30110 0.66 0.685126
Target:  5'- cGAGAugcgGGCGGCgCGGCaccgaGCuGCGGCGc -3'
miRNA:   3'- cCUCU----UCGUCGgGCCGc----UGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 58004 0.66 0.685126
Target:  5'- uGGcucAGCGGcCCCGGCGGacaggccguCGuGCGGCGc -3'
miRNA:   3'- -CCucuUCGUC-GGGCCGCU---------GC-CGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 159977 0.66 0.656155
Target:  5'- cGGucGAucGCAGCCgcagcgGGCGACGGC-GCGa -3'
miRNA:   3'- -CCu-CUu-CGUCGGg-----CCGCUGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 59458 0.66 0.646454
Target:  5'- ---aAAGCGGCCCcGCG-CGGCaGGCa -3'
miRNA:   3'- ccucUUCGUCGGGcCGCuGCCG-CCGc -5'
24746 5' -62.1 NC_005264.1 + 152281 0.66 0.684165
Target:  5'- -aGGAAGCAGCggcgaaCGcGCGAUccgcgccccugagGGCGGCGc -3'
miRNA:   3'- ccUCUUCGUCGg-----GC-CGCUG-------------CCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 33600 0.66 0.684165
Target:  5'- cGGAcGAGGCuugccgccgcuaaAGUUCGGCcaGAuUGGCGGCGa -3'
miRNA:   3'- -CCU-CUUCG-------------UCGGGCCG--CU-GCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 126287 0.66 0.665839
Target:  5'- cGGAGGucGGC-GCCaGGacgaaGACGGCGGgGc -3'
miRNA:   3'- -CCUCU--UCGuCGGgCCg----CUGCCGCCgC- -5'
24746 5' -62.1 NC_005264.1 + 17769 0.66 0.693757
Target:  5'- aGGAG-AGCuGCCCGGCccggcuucuaGAgcgccaagguaccUGGCGGUa -3'
miRNA:   3'- -CCUCuUCGuCGGGCCG----------CU-------------GCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 27149 0.66 0.685126
Target:  5'- cGAGGGcCGGCCCGuccGUGcaggccgucuucACGGCGGCGc -3'
miRNA:   3'- cCUCUUcGUCGGGC---CGC------------UGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 93782 0.66 0.704255
Target:  5'- cGAcGAuGaccuGCCCGGCGGCcGCGGCc -3'
miRNA:   3'- cCU-CUuCgu--CGGGCCGCUGcCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 67515 0.66 0.694714
Target:  5'- --cGcGGC-GCCCGGCGGCGGCa--- -3'
miRNA:   3'- ccuCuUCGuCGGGCCGCUGCCGccgc -5'
24746 5' -62.1 NC_005264.1 + 83714 0.66 0.675498
Target:  5'- cGGuGGcGGCGGCuaGGUacGCGGCGGCa -3'
miRNA:   3'- -CCuCU-UCGUCGggCCGc-UGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 126893 0.66 0.704255
Target:  5'- -uGGggGCGGCgUCGGCGccccagauGCGGCGuCGg -3'
miRNA:   3'- ccUCuuCGUCG-GGCCGC--------UGCCGCcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.