miRNA display CGI


Results 1 - 20 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24746 5' -62.1 NC_005264.1 + 107183 0.7 0.424006
Target:  5'- aGGAuaccGggGCcGCCaaaacuaaaGGCGGCGGCGcGCGc -3'
miRNA:   3'- -CCU----CuuCGuCGGg--------CCGCUGCCGC-CGC- -5'
24746 5' -62.1 NC_005264.1 + 88941 0.72 0.323861
Target:  5'- aGGuGccuGGCAcGCCugcugcgagaguCGGCGACGGCGGUGa -3'
miRNA:   3'- -CCuCu--UCGU-CGG------------GCCGCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 56800 0.72 0.323861
Target:  5'- uGGAGgcGCAuCgCCGGUGucgguCGGCGGCGc -3'
miRNA:   3'- -CCUCuuCGUcG-GGCCGCu----GCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 84507 0.72 0.338062
Target:  5'- uGGAGAAGCuGUUCGGCGACaGCGa-- -3'
miRNA:   3'- -CCUCUUCGuCGGGCCGCUGcCGCcgc -5'
24746 5' -62.1 NC_005264.1 + 162243 0.71 0.3678
Target:  5'- gGGGGggGgGGCUaCGGCGG-GGCuGGCGg -3'
miRNA:   3'- -CCUCuuCgUCGG-GCCGCUgCCG-CCGC- -5'
24746 5' -62.1 NC_005264.1 + 5264 0.71 0.399288
Target:  5'- cGGGGAAGCgcccaAGCCCGGCcuc-GUGGCGu -3'
miRNA:   3'- -CCUCUUCG-----UCGGGCCGcugcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 20436 0.7 0.423167
Target:  5'- --cGAAGCAGCaaugugggcguagCCGGCgGACaGCGGCGc -3'
miRNA:   3'- ccuCUUCGUCG-------------GGCCG-CUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 160115 0.7 0.424006
Target:  5'- -uAGAAGacgGGCCCGGCcGCGGgCGGCc -3'
miRNA:   3'- ccUCUUCg--UCGGGCCGcUGCC-GCCGc -5'
24746 5' -62.1 NC_005264.1 + 67021 0.7 0.424006
Target:  5'- cGGAGcGGCGGCCUugcgcaGGCccccGACguaaGGCGGCGg -3'
miRNA:   3'- -CCUCuUCGUCGGG------CCG----CUG----CCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 17681 0.72 0.323861
Target:  5'- -cAGgcGCAGCCgaGGCcGCGGCGGCu -3'
miRNA:   3'- ccUCuuCGUCGGg-CCGcUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 125834 0.72 0.323861
Target:  5'- aGGGGAcggucaGGguGUugCCGGaGGCGGCGGCGa -3'
miRNA:   3'- -CCUCU------UCguCG--GGCCgCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 385 0.73 0.316929
Target:  5'- uGGGggGCAGCgCCGGCG-CGGUcGUGu -3'
miRNA:   3'- cCUCuuCGUCG-GGCCGCuGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 158207 0.79 0.121101
Target:  5'- cGAGAAGCGGCCCGGCGauuuucgagaacGCGccuacgccgccGCGGCGc -3'
miRNA:   3'- cCUCUUCGUCGGGCCGC------------UGC-----------CGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 79105 0.79 0.130405
Target:  5'- gGGAGAcGCuuaAGCUCGGC-ACGGCGGCGu -3'
miRNA:   3'- -CCUCUuCG---UCGGGCCGcUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 124298 0.76 0.192005
Target:  5'- cGAGucGCGGCCggaCGGCGggGCGGCGGCu -3'
miRNA:   3'- cCUCuuCGUCGG---GCCGC--UGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 124825 0.76 0.195213
Target:  5'- cGAGgcGCccacggcguucaauAGUCCGGCGGCGGUGGCc -3'
miRNA:   3'- cCUCuuCG--------------UCGGGCCGCUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 16564 0.76 0.201294
Target:  5'- cGGuG-GGCGGCgCCGG-GGCGGCGGCGc -3'
miRNA:   3'- -CCuCuUCGUCG-GGCCgCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 16901 0.74 0.271543
Target:  5'- aGAGAAauucccGuCGGCCgCGGaCGAUGGCGGCGg -3'
miRNA:   3'- cCUCUU------C-GUCGG-GCC-GCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 156604 0.73 0.296808
Target:  5'- -cGGAGGCGGCaagucucgCGGCGGCcGCGGCGg -3'
miRNA:   3'- ccUCUUCGUCGg-------GCCGCUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 118031 0.73 0.296808
Target:  5'- uGGAGAaauggaGGUuuGCCgCGGCGACcGCGGCGu -3'
miRNA:   3'- -CCUCU------UCGu-CGG-GCCGCUGcCGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.