miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24746 5' -62.1 NC_005264.1 + 7867 0.66 0.704255
Target:  5'- -uGGggGCGGCgUCGGCGccccagauGCGGCGuCGg -3'
miRNA:   3'- ccUCuuCGUCG-GGCCGC--------UGCCGCcGC- -5'
24746 5' -62.1 NC_005264.1 + 40950 0.66 0.656155
Target:  5'- cGGucGAucGCAGCCgcagcgGGCGACGGC-GCGa -3'
miRNA:   3'- -CCu-CUu-CGUCGGg-----CCGCUGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 155250 0.66 0.646454
Target:  5'- uGAGGaagcaucuccgcAGCGGCgCGGgguaGGCGGCGGgGa -3'
miRNA:   3'- cCUCU------------UCGUCGgGCCg---CUGCCGCCgC- -5'
24746 5' -62.1 NC_005264.1 + 30599 1.1 0.000789
Target:  5'- gGGAGAAGCAGCCCGGCGACGGCGGCGg -3'
miRNA:   3'- -CCUCUUCGUCGGGCCGCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 96249 0.66 0.686087
Target:  5'- --cGgcGCAGCCCaGCGAgagccuguaccagcaGGUGGCGg -3'
miRNA:   3'- ccuCuuCGUCGGGcCGCUg--------------CCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 21740 0.66 0.685126
Target:  5'- uGGAGu-GgGGCCUu-CGGCGGCGGCc -3'
miRNA:   3'- -CCUCuuCgUCGGGccGCUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 4180 0.66 0.685126
Target:  5'- uGGGGAAGCggagGGUCCGaGgGACGGgaGGUu -3'
miRNA:   3'- -CCUCUUCG----UCGGGC-CgCUGCCg-CCGc -5'
24746 5' -62.1 NC_005264.1 + 74298 0.66 0.685126
Target:  5'- -uAGcGGCGGUCUGGCGcGCGGCauGGCc -3'
miRNA:   3'- ccUCuUCGUCGGGCCGC-UGCCG--CCGc -5'
24746 5' -62.1 NC_005264.1 + 110312 0.66 0.675498
Target:  5'- aGAGAGGacacuaacacCAGCCUGuuCGACGGCGuGCa -3'
miRNA:   3'- cCUCUUC----------GUCGGGCc-GCUGCCGC-CGc -5'
24746 5' -62.1 NC_005264.1 + 57872 0.66 0.665839
Target:  5'- aGAGAcGGCGGCaCGGCGGCcauGGC-GCGg -3'
miRNA:   3'- cCUCU-UCGUCGgGCCGCUG---CCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 66723 0.66 0.665839
Target:  5'- cGGGGAGCaacaAGCgCCGGCGccuaaACcGCGGCa -3'
miRNA:   3'- cCUCUUCG----UCG-GGCCGC-----UGcCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 34069 0.66 0.682242
Target:  5'- cGAGAAGaaggaAGCCCGcaguuugccGCGGCGggcacaauggcucaGCGGCGc -3'
miRNA:   3'- cCUCUUCg----UCGGGC---------CGCUGC--------------CGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 110368 0.66 0.694714
Target:  5'- cGAGGAGUAuGCuaauaCCGcCGACGGCgGGCGc -3'
miRNA:   3'- cCUCUUCGU-CG-----GGCcGCUGCCG-CCGC- -5'
24746 5' -62.1 NC_005264.1 + 7260 0.66 0.665839
Target:  5'- cGGAGGucGGC-GCCaGGacgaaGACGGCGGgGc -3'
miRNA:   3'- -CCUCU--UCGuCGGgCCg----CUGCCGCCgC- -5'
24746 5' -62.1 NC_005264.1 + 129597 0.66 0.694714
Target:  5'- ---cAGGC-GCUgCGGCG-CGGCGGCGa -3'
miRNA:   3'- ccucUUCGuCGG-GCCGCuGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 33254 0.66 0.684165
Target:  5'- -aGGAAGCAGCggcgaaCGcGCGAUccgcgccccugagGGCGGCGc -3'
miRNA:   3'- ccUCUUCGUCGg-----GC-CGCUG-------------CCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 120730 0.66 0.665839
Target:  5'- cGGAGGA-CGGUgCCGGCGACuGCGaCGa -3'
miRNA:   3'- -CCUCUUcGUCG-GGCCGCUGcCGCcGC- -5'
24746 5' -62.1 NC_005264.1 + 39081 0.66 0.656155
Target:  5'- -cGGAcGcCGGCUCGGCgGGCaGCGGCGu -3'
miRNA:   3'- ccUCUuC-GUCGGGCCG-CUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 134955 0.66 0.688966
Target:  5'- cGAGAcGCuGGCCagacacgacaaaaaGGCGGCGGCgcauugGGCGg -3'
miRNA:   3'- cCUCUuCG-UCGGg-------------CCGCUGCCG------CCGC- -5'
24746 5' -62.1 NC_005264.1 + 123237 0.66 0.685126
Target:  5'- aGGAGcAAGCGcgcagcuccGUCUGGCGGgGGCaGCa -3'
miRNA:   3'- -CCUC-UUCGU---------CGGGCCGCUgCCGcCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.