miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24746 5' -62.1 NC_005264.1 + 149626 1.1 0.000789
Target:  5'- gGGAGAAGCAGCCCGGCGACGGCGGCGg -3'
miRNA:   3'- -CCUCUUCGUCGGGCCGCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 30599 1.1 0.000789
Target:  5'- gGGAGAAGCAGCCCGGCGACGGCGGCGg -3'
miRNA:   3'- -CCUCUUCGUCGGGCCGCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 103716 0.81 0.092028
Target:  5'- uGGAGcGGCGGCgCGGCaucaGCGGCGGCGg -3'
miRNA:   3'- -CCUCuUCGUCGgGCCGc---UGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 158207 0.79 0.121101
Target:  5'- cGAGAAGCGGCCCGGCGauuuucgagaacGCGccuacgccgccGCGGCGc -3'
miRNA:   3'- cCUCUUCGUCGGGCCGC------------UGC-----------CGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 39180 0.79 0.121101
Target:  5'- cGAGAAGCGGCCCGGCGauuuucgagaacGCGccuacgccgccGCGGCGc -3'
miRNA:   3'- cCUCUUCGUCGGGCCGC------------UGC-----------CGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 20227 0.79 0.130405
Target:  5'- aGGcGAGGUAGCCCGGCGuggccaucgucGCGGcCGGCa -3'
miRNA:   3'- -CCuCUUCGUCGGGCCGC-----------UGCC-GCCGc -5'
24746 5' -62.1 NC_005264.1 + 79105 0.79 0.130405
Target:  5'- gGGAGAcGCuuaAGCUCGGC-ACGGCGGCGu -3'
miRNA:   3'- -CCUCUuCG---UCGGGCCGcUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 5271 0.76 0.192005
Target:  5'- cGAGucGCGGCCggaCGGCGggGCGGCGGCu -3'
miRNA:   3'- cCUCuuCGUCGG---GCCGC--UGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 124298 0.76 0.192005
Target:  5'- cGAGucGCGGCCggaCGGCGggGCGGCGGCu -3'
miRNA:   3'- cCUCuuCGUCGG---GCCGC--UGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 5799 0.76 0.195213
Target:  5'- cGAGgcGCccacggcguucaauAGUCCGGCGGCGGUGGCc -3'
miRNA:   3'- cCUCuuCG--------------UCGGGCCGCUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 124825 0.76 0.195213
Target:  5'- cGAGgcGCccacggcguucaauAGUCCGGCGGCGGUGGCc -3'
miRNA:   3'- cCUCuuCG--------------UCGGGCCGCUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 16564 0.76 0.201294
Target:  5'- cGGuG-GGCGGCgCCGG-GGCGGCGGCGc -3'
miRNA:   3'- -CCuCuUCGUCG-GGCCgCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 109066 0.74 0.25375
Target:  5'- uGGAacAGCAGCCCaGCGAUuGUGGCGa -3'
miRNA:   3'- -CCUcuUCGUCGGGcCGCUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 106514 0.74 0.265503
Target:  5'- --cGAGGCGGUgC-GCGACGGCGGCa -3'
miRNA:   3'- ccuCUUCGUCGgGcCGCUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 29134 0.74 0.271543
Target:  5'- -cAGAGGCAGCaCCaGUGcGCGGCGGCa -3'
miRNA:   3'- ccUCUUCGUCG-GGcCGC-UGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 16901 0.74 0.271543
Target:  5'- aGAGAAauucccGuCGGCCgCGGaCGAUGGCGGCGg -3'
miRNA:   3'- cCUCUU------C-GUCGG-GCC-GCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 37577 0.73 0.296808
Target:  5'- -cGGAGGCGGCaagucucgCGGCGGCcGCGGCGg -3'
miRNA:   3'- ccUCUUCGUCGg-------GCCGCUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 118031 0.73 0.296808
Target:  5'- uGGAGAaauggaGGUuuGCCgCGGCGACcGCGGCGu -3'
miRNA:   3'- -CCUCU------UCGu-CGG-GCCGCUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 156604 0.73 0.296808
Target:  5'- -cGGAGGCGGCaagucucgCGGCGGCcGCGGCGg -3'
miRNA:   3'- ccUCUUCGUCGg-------GCCGCUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 17983 0.73 0.303403
Target:  5'- cGAGcgcguucaAAGcCGGCaCCGGCucuGACGGCGGCGg -3'
miRNA:   3'- cCUC--------UUC-GUCG-GGCCG---CUGCCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.