miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24746 5' -62.1 NC_005264.1 + 385 0.73 0.316929
Target:  5'- uGGGggGCAGCgCCGGCG-CGGUcGUGu -3'
miRNA:   3'- cCUCuuCGUCG-GGCCGCuGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 125834 0.72 0.323861
Target:  5'- aGGGGAcggucaGGguGUugCCGGaGGCGGCGGCGa -3'
miRNA:   3'- -CCUCU------UCguCG--GGCCgCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 17681 0.72 0.323861
Target:  5'- -cAGgcGCAGCCgaGGCcGCGGCGGCu -3'
miRNA:   3'- ccUCuuCGUCGGg-CCGcUGCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 141491 0.72 0.323861
Target:  5'- --cGAGGCGGCCCGGgaCGaACGGCaGCGc -3'
miRNA:   3'- ccuCUUCGUCGGGCC--GC-UGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 101022 0.72 0.323861
Target:  5'- cGAGccAGGCAcuGCCCGGCGAUGcccGCGGCc -3'
miRNA:   3'- cCUC--UUCGU--CGGGCCGCUGC---CGCCGc -5'
24746 5' -62.1 NC_005264.1 + 6808 0.72 0.323861
Target:  5'- aGGGGAcggucaGGguGUugCCGGaGGCGGCGGCGa -3'
miRNA:   3'- -CCUCU------UCguCG--GGCCgCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 56800 0.72 0.323861
Target:  5'- uGGAGgcGCAuCgCCGGUGucgguCGGCGGCGc -3'
miRNA:   3'- -CCUCuuCGUcG-GGCCGCu----GCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 88941 0.72 0.323861
Target:  5'- aGGuGccuGGCAcGCCugcugcgagaguCGGCGACGGCGGUGa -3'
miRNA:   3'- -CCuCu--UCGU-CGG------------GCCGCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 97075 0.72 0.330905
Target:  5'- gGGAGGuaaaauauaaGGguGCgCCGGcCGACGGCGGa- -3'
miRNA:   3'- -CCUCU----------UCguCG-GGCC-GCUGCCGCCgc -5'
24746 5' -62.1 NC_005264.1 + 84507 0.72 0.338062
Target:  5'- uGGAGAAGCuGUUCGGCGACaGCGa-- -3'
miRNA:   3'- -CCUCUUCGuCGGGCCGCUGcCGCcgc -5'
24746 5' -62.1 NC_005264.1 + 48718 0.72 0.352709
Target:  5'- gGGAGAugaGGCGG-CCGGCGAUGcugaugaaGCGGCu -3'
miRNA:   3'- -CCUCU---UCGUCgGGCCGCUGC--------CGCCGc -5'
24746 5' -62.1 NC_005264.1 + 43216 0.71 0.3678
Target:  5'- gGGGGggGgGGCUaCGGCGG-GGCuGGCGg -3'
miRNA:   3'- -CCUCuuCgUCGG-GCCGCUgCCG-CCGC- -5'
24746 5' -62.1 NC_005264.1 + 131600 0.71 0.3678
Target:  5'- uGGAgGGAGCGGCgC-GCGugGGCGcGCGc -3'
miRNA:   3'- -CCU-CUUCGUCGgGcCGCugCCGC-CGC- -5'
24746 5' -62.1 NC_005264.1 + 162243 0.71 0.3678
Target:  5'- gGGGGggGgGGCUaCGGCGG-GGCuGGCGg -3'
miRNA:   3'- -CCUCuuCgUCGG-GCCGCUgCCG-CCGC- -5'
24746 5' -62.1 NC_005264.1 + 133354 0.71 0.390458
Target:  5'- aGAGAccGCGGCCCuccucgacgacucGGCGagagucaucGCGGCGGCGc -3'
miRNA:   3'- cCUCUu-CGUCGGG-------------CCGC---------UGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 71608 0.71 0.391256
Target:  5'- -uGGAAGCccucaCCGGCGA-GGCGGCGg -3'
miRNA:   3'- ccUCUUCGucg--GGCCGCUgCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 5264 0.71 0.399288
Target:  5'- cGGGGAAGCgcccaAGCCCGGCcuc-GUGGCGu -3'
miRNA:   3'- -CCUCUUCG-----UCGGGCCGcugcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 79413 0.71 0.415664
Target:  5'- cGAGGccgcGGCGGaaCCCaGCGugGGCGGUGc -3'
miRNA:   3'- cCUCU----UCGUC--GGGcCGCugCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 44869 0.71 0.415664
Target:  5'- aGAGAucuGCAGCCUGGgGA-GGCGGg- -3'
miRNA:   3'- cCUCUu--CGUCGGGCCgCUgCCGCCgc -5'
24746 5' -62.1 NC_005264.1 + 20436 0.7 0.423167
Target:  5'- --cGAAGCAGCaaugugggcguagCCGGCgGACaGCGGCGc -3'
miRNA:   3'- ccuCUUCGUCG-------------GGCCG-CUGcCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.