miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24746 5' -62.1 NC_005264.1 + 162659 0.67 0.617316
Target:  5'- -cGGAAGC-GCgCCGGCGggucguagguguACGGuCGGCGc -3'
miRNA:   3'- ccUCUUCGuCG-GGCCGC------------UGCC-GCCGC- -5'
24746 5' -62.1 NC_005264.1 + 162243 0.71 0.3678
Target:  5'- gGGGGggGgGGCUaCGGCGG-GGCuGGCGg -3'
miRNA:   3'- -CCUCuuCgUCGG-GCCGCUgCCG-CCGC- -5'
24746 5' -62.1 NC_005264.1 + 160115 0.7 0.424006
Target:  5'- -uAGAAGacgGGCCCGGCcGCGGgCGGCc -3'
miRNA:   3'- ccUCUUCg--UCGGGCCGcUGCC-GCCGc -5'
24746 5' -62.1 NC_005264.1 + 159977 0.66 0.656155
Target:  5'- cGGucGAucGCAGCCgcagcgGGCGACGGC-GCGa -3'
miRNA:   3'- -CCu-CUu-CGUCGGg-----CCGCUGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 159381 0.67 0.59793
Target:  5'- -uGGAuGCGGCaCCgGGCGccACgGGCGGCGg -3'
miRNA:   3'- ccUCUuCGUCG-GG-CCGC--UG-CCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 158207 0.79 0.121101
Target:  5'- cGAGAAGCGGCCCGGCGauuuucgagaacGCGccuacgccgccGCGGCGc -3'
miRNA:   3'- cCUCUUCGUCGGGCCGC------------UGC-----------CGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 158108 0.66 0.656155
Target:  5'- -cGGAcGcCGGCUCGGCgGGCaGCGGCGu -3'
miRNA:   3'- ccUCUuC-GUCGGGCCG-CUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 157386 0.69 0.485042
Target:  5'- cGGcGggGCGGUuaggaccuccuCCGGCGAgaGCGGCGa -3'
miRNA:   3'- -CCuCuuCGUCG-----------GGCCGCUgcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 157298 0.68 0.569036
Target:  5'- cGGuGAcGuCAGuCCCGG--ACGGCGGCGa -3'
miRNA:   3'- -CCuCUuC-GUC-GGGCCgcUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 156997 0.69 0.503249
Target:  5'- aGGGcGAuaaccGCGGCCaGGCGAgUGGCGGCc -3'
miRNA:   3'- -CCU-CUu----CGUCGGgCCGCU-GCCGCCGc -5'
24746 5' -62.1 NC_005264.1 + 156604 0.73 0.296808
Target:  5'- -cGGAGGCGGCaagucucgCGGCGGCcGCGGCGg -3'
miRNA:   3'- ccUCUUCGUCGg-------GCCGCUGcCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 155990 0.7 0.444426
Target:  5'- cGGGAuaguucccggcaaccAGCAagguacGCCCGGCGACGcuugcGCGGUGg -3'
miRNA:   3'- cCUCU---------------UCGU------CGGGCCGCUGC-----CGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 155250 0.66 0.646454
Target:  5'- uGAGGaagcaucuccgcAGCGGCgCGGgguaGGCGGCGGgGa -3'
miRNA:   3'- cCUCU------------UCGUCGgGCCg---CUGCCGCCgC- -5'
24746 5' -62.1 NC_005264.1 + 154804 0.66 0.675498
Target:  5'- -aAGAGGCGGag-GGCG-CGGUGGCGc -3'
miRNA:   3'- ccUCUUCGUCgggCCGCuGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 154608 0.67 0.616345
Target:  5'- gGGGGGAGCuGCUgcggcuuCGGcCGAUGGCcGCGu -3'
miRNA:   3'- -CCUCUUCGuCGG-------GCC-GCUGCCGcCGC- -5'
24746 5' -62.1 NC_005264.1 + 153096 0.66 0.682242
Target:  5'- cGAGAAGaaggaAGCCCGcaguuugccGCGGCGggcacaauggcucaGCGGCGc -3'
miRNA:   3'- cCUCUUCg----UCGGGC---------CGCUGC--------------CGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 152357 0.67 0.617316
Target:  5'- cGGGGAGGaaCAGCUUuacuacauUGACGGCGGCGg -3'
miRNA:   3'- -CCUCUUC--GUCGGGcc------GCUGCCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 152281 0.66 0.684165
Target:  5'- -aGGAAGCAGCggcgaaCGcGCGAUccgcgccccugagGGCGGCGc -3'
miRNA:   3'- ccUCUUCGUCGg-----GC-CGCUG-------------CCGCCGC- -5'
24746 5' -62.1 NC_005264.1 + 151846 0.67 0.617316
Target:  5'- uGGGGccGCcGCuCCGGCGGCgacacgugGGgGGCGu -3'
miRNA:   3'- -CCUCuuCGuCG-GGCCGCUG--------CCgCCGC- -5'
24746 5' -62.1 NC_005264.1 + 150613 0.68 0.568078
Target:  5'- aGGuGggGCgAGUCUgcucucuGGCGA-GGCGGCGc -3'
miRNA:   3'- -CCuCuuCG-UCGGG-------CCGCUgCCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.