Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24748 | 3' | -59 | NC_005264.1 | + | 150915 | 1.06 | 0.002423 |
Target: 5'- uUCACCCCAGCGGCGACCGUGGGAAAAu -3' miRNA: 3'- -AGUGGGGUCGCCGCUGGCACCCUUUU- -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 145542 | 0.66 | 0.795141 |
Target: 5'- cUCGCgCUAGCGGUaACCGUGGc---- -3' miRNA: 3'- -AGUGgGGUCGCCGcUGGCACCcuuuu -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 92991 | 0.66 | 0.795141 |
Target: 5'- gCGCCgCAGCacGCGGCCGUagcGGGGGc- -3' miRNA: 3'- aGUGGgGUCGc-CGCUGGCA---CCCUUuu -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 158242 | 0.66 | 0.786188 |
Target: 5'- aCGCCgCC-GCGGCG-CUGgcgGGGAGGg -3' miRNA: 3'- aGUGG-GGuCGCCGCuGGCa--CCCUUUu -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 129900 | 0.66 | 0.7771 |
Target: 5'- -uGCUgCuGCGaGgGGCCGUGGGGAAu -3' miRNA: 3'- agUGGgGuCGC-CgCUGGCACCCUUUu -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 125035 | 0.66 | 0.767888 |
Target: 5'- -gGCCCCgacgGGCGGgGAggcuCCG-GGGAAAAc -3' miRNA: 3'- agUGGGG----UCGCCgCU----GGCaCCCUUUU- -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 6902 | 0.66 | 0.767888 |
Target: 5'- gCAgUCCCAGCGcGCGGcuuuCCGUGGGc--- -3' miRNA: 3'- aGU-GGGGUCGC-CGCU----GGCACCCuuuu -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 120000 | 0.66 | 0.758558 |
Target: 5'- -aGCCCCuGgGGCGGCagGUGGGc--- -3' miRNA: 3'- agUGGGGuCgCCGCUGg-CACCCuuuu -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 69688 | 0.66 | 0.758558 |
Target: 5'- gCGCCCCGaCGGUGACU--GGGAAc- -3' miRNA: 3'- aGUGGGGUcGCCGCUGGcaCCCUUuu -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 125610 | 0.67 | 0.733818 |
Target: 5'- gCcCCCCAGgggccgacaggucaaCGGCGAgCgCGUGGGAAAu -3' miRNA: 3'- aGuGGGGUC---------------GCCGCU-G-GCACCCUUUu -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 156215 | 0.67 | 0.729957 |
Target: 5'- -uGCCCCcGC-GUGGCCGUGGGc--- -3' miRNA: 3'- agUGGGGuCGcCGCUGGCACCCuuuu -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 57987 | 0.73 | 0.403434 |
Target: 5'- --uCCCCGcGCGGCGGCCGUGGc---- -3' miRNA: 3'- aguGGGGU-CGCCGCUGGCACCcuuuu -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 13804 | 0.7 | 0.531198 |
Target: 5'- -aACCCgGGCaGGgGGCUGUGGGAc-- -3' miRNA: 3'- agUGGGgUCG-CCgCUGGCACCCUuuu -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 126907 | 0.69 | 0.607481 |
Target: 5'- gCGCCCCAgauGCGGCGucggaggucuccucGCCGgaguacUGGGggGAc -3' miRNA: 3'- aGUGGGGU---CGCCGC--------------UGGC------ACCCuuUU- -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 162701 | 0.68 | 0.640667 |
Target: 5'- gCGCgCCGGCguuaaGGCGGCCGccgGGGAGc- -3' miRNA: 3'- aGUGgGGUCG-----CCGCUGGCa--CCCUUuu -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 92126 | 0.68 | 0.690717 |
Target: 5'- aCAgCgCAGCguucGGCGACCGagUGGGAGGGg -3' miRNA: 3'- aGUgGgGUCG----CCGCUGGC--ACCCUUUU- -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 99638 | 0.67 | 0.700619 |
Target: 5'- -gACCCgGaGaCGGCGGCCGUGGcAGAAa -3' miRNA: 3'- agUGGGgU-C-GCCGCUGGCACCcUUUU- -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 121789 | 0.67 | 0.720248 |
Target: 5'- gUC-CCCCGGCGcCGuACCGUcuGGGGAGu -3' miRNA: 3'- -AGuGGGGUCGCcGC-UGGCA--CCCUUUu -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 31889 | 1.06 | 0.002423 |
Target: 5'- uUCACCCCAGCGGCGACCGUGGGAAAAu -3' miRNA: 3'- -AGUGGGGUCGCCGCUGGCACCCUUUU- -5' |
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24748 | 3' | -59 | NC_005264.1 | + | 96050 | 0.66 | 0.786188 |
Target: 5'- -gGCCCaGGCGG-GACCGUguuaggaacguGGGAGGAc -3' miRNA: 3'- agUGGGgUCGCCgCUGGCA-----------CCCUUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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