miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24748 3' -59 NC_005264.1 + 974 0.66 0.758558
Target:  5'- -aGCCCCuGgGGCGGCagGUGGGc--- -3'
miRNA:   3'- agUGGGGuCgCCGCUGg-CACCCuuuu -5'
24748 3' -59 NC_005264.1 + 2763 0.67 0.720248
Target:  5'- gUC-CCCCGGCGcCGuACCGUcuGGGGAGu -3'
miRNA:   3'- -AGuGGGGUCGCcGC-UGGCA--CCCUUUu -5'
24748 3' -59 NC_005264.1 + 6008 0.66 0.767888
Target:  5'- -gGCCCCgacgGGCGGgGAggcuCCG-GGGAAAAc -3'
miRNA:   3'- agUGGGG----UCGCCgCU----GGCaCCCUUUU- -5'
24748 3' -59 NC_005264.1 + 6583 0.67 0.733818
Target:  5'- gCcCCCCAGgggccgacaggucaaCGGCGAgCgCGUGGGAAAu -3'
miRNA:   3'- aGuGGGGUC---------------GCCGCU-G-GCACCCUUUu -5'
24748 3' -59 NC_005264.1 + 6902 0.66 0.767888
Target:  5'- gCAgUCCCAGCGcGCGGcuuuCCGUGGGc--- -3'
miRNA:   3'- aGU-GGGGUCGC-CGCU----GGCACCCuuuu -5'
24748 3' -59 NC_005264.1 + 7881 0.69 0.607481
Target:  5'- gCGCCCCAgauGCGGCGucggaggucuccucGCCGgaguacUGGGggGAc -3'
miRNA:   3'- aGUGGGGU---CGCCGC--------------UGGC------ACCCuuUU- -5'
24748 3' -59 NC_005264.1 + 10874 0.66 0.7771
Target:  5'- -uGCUgCuGCGaGgGGCCGUGGGGAAu -3'
miRNA:   3'- agUGGgGuCGC-CgCUGGCACCCUUUu -5'
24748 3' -59 NC_005264.1 + 13804 0.7 0.531198
Target:  5'- -aACCCgGGCaGGgGGCUGUGGGAc-- -3'
miRNA:   3'- agUGGGgUCG-CCgCUGGCACCCUuuu -5'
24748 3' -59 NC_005264.1 + 14181 0.67 0.724141
Target:  5'- cUCGCCUCGGUGGCGaucGCCGUcgccccaucggccacGGcGGAAAa -3'
miRNA:   3'- -AGUGGGGUCGCCGC---UGGCA---------------CC-CUUUU- -5'
24748 3' -59 NC_005264.1 + 15283 0.66 0.786188
Target:  5'- aCACgUCGGCGGCcacuucgcGCCGcGGGAAAGa -3'
miRNA:   3'- aGUGgGGUCGCCGc-------UGGCaCCCUUUU- -5'
24748 3' -59 NC_005264.1 + 31889 1.06 0.002423
Target:  5'- uUCACCCCAGCGGCGACCGUGGGAAAAu -3'
miRNA:   3'- -AGUGGGGUCGCCGCUGGCACCCUUUU- -5'
24748 3' -59 NC_005264.1 + 37188 0.67 0.729957
Target:  5'- -uGCCCCcGC-GUGGCCGUGGGc--- -3'
miRNA:   3'- agUGGGGuCGcCGCUGGCACCCuuuu -5'
24748 3' -59 NC_005264.1 + 39215 0.66 0.786188
Target:  5'- aCGCCgCC-GCGGCG-CUGgcgGGGAGGg -3'
miRNA:   3'- aGUGG-GGuCGCCGCuGGCa--CCCUUUu -5'
24748 3' -59 NC_005264.1 + 43675 0.68 0.640667
Target:  5'- gCGCgCCGGCguuaaGGCGGCCGccgGGGAGc- -3'
miRNA:   3'- aGUGgGGUCG-----CCGCUGGCa--CCCUUuu -5'
24748 3' -59 NC_005264.1 + 57987 0.73 0.403434
Target:  5'- --uCCCCGcGCGGCGGCCGUGGc---- -3'
miRNA:   3'- aguGGGGU-CGCCGCUGGCACCcuuuu -5'
24748 3' -59 NC_005264.1 + 64756 0.7 0.560606
Target:  5'- -aACCCCGG-GGCGGCCG-GGGc--- -3'
miRNA:   3'- agUGGGGUCgCCGCUGGCaCCCuuuu -5'
24748 3' -59 NC_005264.1 + 69688 0.66 0.758558
Target:  5'- gCGCCCCGaCGGUGACU--GGGAAc- -3'
miRNA:   3'- aGUGGGGUcGCCGCUGGcaCCCUUuu -5'
24748 3' -59 NC_005264.1 + 72890 0.72 0.446928
Target:  5'- aCGCgCCAGCGGCcGCCGaUGGGcgGAa -3'
miRNA:   3'- aGUGgGGUCGCCGcUGGC-ACCCuuUU- -5'
24748 3' -59 NC_005264.1 + 81890 0.66 0.803952
Target:  5'- gCGCCUUGGCGGCGAUgGgcgGGcGAGc- -3'
miRNA:   3'- aGUGGGGUCGCCGCUGgCa--CC-CUUuu -5'
24748 3' -59 NC_005264.1 + 92126 0.68 0.690717
Target:  5'- aCAgCgCAGCguucGGCGACCGagUGGGAGGGg -3'
miRNA:   3'- aGUgGgGUCG----CCGCUGGC--ACCCUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.