miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24748 3' -59 NC_005264.1 + 162701 0.68 0.640667
Target:  5'- gCGCgCCGGCguuaaGGCGGCCGccgGGGAGc- -3'
miRNA:   3'- aGUGgGGUCG-----CCGCUGGCa--CCCUUuu -5'
24748 3' -59 NC_005264.1 + 158242 0.66 0.786188
Target:  5'- aCGCCgCC-GCGGCG-CUGgcgGGGAGGg -3'
miRNA:   3'- aGUGG-GGuCGCCGCuGGCa--CCCUUUu -5'
24748 3' -59 NC_005264.1 + 156215 0.67 0.729957
Target:  5'- -uGCCCCcGC-GUGGCCGUGGGc--- -3'
miRNA:   3'- agUGGGGuCGcCGCUGGCACCCuuuu -5'
24748 3' -59 NC_005264.1 + 151854 0.87 0.047966
Target:  5'- cCGCUCCGGCGGCGACaCGUGGGggGc -3'
miRNA:   3'- aGUGGGGUCGCCGCUG-GCACCCuuUu -5'
24748 3' -59 NC_005264.1 + 150915 1.06 0.002423
Target:  5'- uUCACCCCAGCGGCGACCGUGGGAAAAu -3'
miRNA:   3'- -AGUGGGGUCGCCGCUGGCACCCUUUU- -5'
24748 3' -59 NC_005264.1 + 145542 0.66 0.795141
Target:  5'- cUCGCgCUAGCGGUaACCGUGGc---- -3'
miRNA:   3'- -AGUGgGGUCGCCGcUGGCACCcuuuu -5'
24748 3' -59 NC_005264.1 + 137935 0.66 0.758558
Target:  5'- gUCACCCCAGCGacGCGACUauacGAAGAg -3'
miRNA:   3'- -AGUGGGGUCGC--CGCUGGcaccCUUUU- -5'
24748 3' -59 NC_005264.1 + 135065 0.69 0.590444
Target:  5'- -aGCUggUCGGCGGCcauCCGUGGGAAGAc -3'
miRNA:   3'- agUGG--GGUCGCCGcu-GGCACCCUUUU- -5'
24748 3' -59 NC_005264.1 + 129900 0.66 0.7771
Target:  5'- -uGCUgCuGCGaGgGGCCGUGGGGAAu -3'
miRNA:   3'- agUGGgGuCGC-CgCUGGCACCCUUUu -5'
24748 3' -59 NC_005264.1 + 128077 0.73 0.370627
Target:  5'- cUCAUCUucguguagcgaCAGCGGCGACCGgcgcgccGGGAAGAa -3'
miRNA:   3'- -AGUGGG-----------GUCGCCGCUGGCa------CCCUUUU- -5'
24748 3' -59 NC_005264.1 + 127682 0.67 0.749121
Target:  5'- cUugCCCAccagacacaccGCGGCcaGGCCG-GGGAAGAa -3'
miRNA:   3'- aGugGGGU-----------CGCCG--CUGGCaCCCUUUU- -5'
24748 3' -59 NC_005264.1 + 126907 0.69 0.607481
Target:  5'- gCGCCCCAgauGCGGCGucggaggucuccucGCCGgaguacUGGGggGAc -3'
miRNA:   3'- aGUGGGGU---CGCCGC--------------UGGC------ACCCuuUU- -5'
24748 3' -59 NC_005264.1 + 125610 0.67 0.733818
Target:  5'- gCcCCCCAGgggccgacaggucaaCGGCGAgCgCGUGGGAAAu -3'
miRNA:   3'- aGuGGGGUC---------------GCCGCU-G-GCACCCUUUu -5'
24748 3' -59 NC_005264.1 + 125035 0.66 0.767888
Target:  5'- -gGCCCCgacgGGCGGgGAggcuCCG-GGGAAAAc -3'
miRNA:   3'- agUGGGG----UCGCCgCU----GGCaCCCUUUU- -5'
24748 3' -59 NC_005264.1 + 121789 0.67 0.720248
Target:  5'- gUC-CCCCGGCGcCGuACCGUcuGGGGAGu -3'
miRNA:   3'- -AGuGGGGUCGCcGC-UGGCA--CCCUUUu -5'
24748 3' -59 NC_005264.1 + 120000 0.66 0.758558
Target:  5'- -aGCCCCuGgGGCGGCagGUGGGc--- -3'
miRNA:   3'- agUGGGGuCgCCGCUGg-CACCCuuuu -5'
24748 3' -59 NC_005264.1 + 99638 0.67 0.700619
Target:  5'- -gACCCgGaGaCGGCGGCCGUGGcAGAAa -3'
miRNA:   3'- agUGGGgU-C-GCCGCUGGCACCcUUUU- -5'
24748 3' -59 NC_005264.1 + 96050 0.66 0.786188
Target:  5'- -gGCCCaGGCGG-GACCGUguuaggaacguGGGAGGAc -3'
miRNA:   3'- agUGGGgUCGCCgCUGGCA-----------CCCUUUU- -5'
24748 3' -59 NC_005264.1 + 93020 0.69 0.590444
Target:  5'- uUCACCCCGGCGGCGucguCCGcgccGAAu- -3'
miRNA:   3'- -AGUGGGGUCGCCGCu---GGCacc-CUUuu -5'
24748 3' -59 NC_005264.1 + 92991 0.66 0.795141
Target:  5'- gCGCCgCAGCacGCGGCCGUagcGGGGGc- -3'
miRNA:   3'- aGUGGgGUCGc-CGCUGGCA---CCCUUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.