miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24748 5' -57.3 NC_005264.1 + 146405 0.67 0.809585
Target:  5'- -----aCCCGCgggcaGGCCC-CGCGGCagUCGa -3'
miRNA:   3'- guaaaaGGGUG-----CCGGGaGCGCCG--AGC- -5'
24748 5' -57.3 NC_005264.1 + 147549 0.68 0.791984
Target:  5'- --cUUUCCCGCGGCgCgaaGUGGC-CGc -3'
miRNA:   3'- guaAAAGGGUGCCGgGag-CGCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 139806 0.68 0.791984
Target:  5'- gCGUg--CCguCGGCCgUCGCGGgaCGa -3'
miRNA:   3'- -GUAaaaGGguGCCGGgAGCGCCgaGC- -5'
24748 5' -57.3 NC_005264.1 + 1042 0.68 0.791088
Target:  5'- ---aUUCUCGCGGUUCUUGCuccaccgugcggaGGCUCGc -3'
miRNA:   3'- guaaAAGGGUGCCGGGAGCG-------------CCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 29768 0.68 0.782969
Target:  5'- ------aCCACaGCUcgCUCGCGGCUCGc -3'
miRNA:   3'- guaaaagGGUGcCGG--GAGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 144778 0.68 0.773823
Target:  5'- -----gCCCGCGcGCCCuggcUCGCGGCg-- -3'
miRNA:   3'- guaaaaGGGUGC-CGGG----AGCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 67948 0.68 0.764555
Target:  5'- ----gUUCC-CGGCgCCU-GCGGCUCGa -3'
miRNA:   3'- guaaaAGGGuGCCG-GGAgCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 97898 0.68 0.755173
Target:  5'- ----aUUCCGCGG-CCUCGCgaaGGCUCu -3'
miRNA:   3'- guaaaAGGGUGCCgGGAGCG---CCGAGc -5'
24748 5' -57.3 NC_005264.1 + 75197 0.68 0.755173
Target:  5'- cCAgg-UCCCGCGcCCCaCGCGGCUg- -3'
miRNA:   3'- -GUaaaAGGGUGCcGGGaGCGCCGAgc -5'
24748 5' -57.3 NC_005264.1 + 160165 0.68 0.755173
Target:  5'- ------aCCACGcuGCCCUCGCGG-UCGg -3'
miRNA:   3'- guaaaagGGUGC--CGGGAGCGCCgAGC- -5'
24748 5' -57.3 NC_005264.1 + 41138 0.68 0.755173
Target:  5'- ------aCCACGcuGCCCUCGCGG-UCGg -3'
miRNA:   3'- guaaaagGGUGC--CGGGAGCGCCgAGC- -5'
24748 5' -57.3 NC_005264.1 + 132076 0.68 0.755173
Target:  5'- ----cUCCggaagaGCGGCCCUCguuuccccugaGCGGCUCu -3'
miRNA:   3'- guaaaAGGg-----UGCCGGGAG-----------CGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 24655 0.68 0.754229
Target:  5'- -----cCCCACGGUUCUggccaccUGCGGUUCGa -3'
miRNA:   3'- guaaaaGGGUGCCGGGA-------GCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 65594 0.69 0.749493
Target:  5'- -----cCCgGCGGCCaCaucuugcugcugcguUCGCGGCUCGu -3'
miRNA:   3'- guaaaaGGgUGCCGG-G---------------AGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 133894 0.69 0.736102
Target:  5'- gCGUUcaCCCACGGCUCguaCGCGGUa-- -3'
miRNA:   3'- -GUAAaaGGGUGCCGGGa--GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 40207 0.69 0.736102
Target:  5'- -----cCUCGCGGCCCccCGCGGCg-- -3'
miRNA:   3'- guaaaaGGGUGCCGGGa-GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 159234 0.69 0.736102
Target:  5'- -----cCUCGCGGCCCccCGCGGCg-- -3'
miRNA:   3'- guaaaaGGGUGCCGGGa-GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 5940 0.69 0.72643
Target:  5'- ------aCCACGGCCCgaaccCGCGGCg-- -3'
miRNA:   3'- guaaaagGGUGCCGGGa----GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 99760 0.69 0.696977
Target:  5'- --cUUUCCgCgACGGCCCUCGcCGaGCUgGa -3'
miRNA:   3'- guaAAAGG-G-UGCCGGGAGC-GC-CGAgC- -5'
24748 5' -57.3 NC_005264.1 + 25292 0.69 0.696977
Target:  5'- -uUUUUCCCugGGUCCgcgaaGCGGUcuuccUCGa -3'
miRNA:   3'- guAAAAGGGugCCGGGag---CGCCG-----AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.