miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24748 5' -57.3 NC_005264.1 + 53899 0.71 0.636876
Target:  5'- cCGUUUUUCCACagGGUgCUgaaagccaCGCGGCUCGg -3'
miRNA:   3'- -GUAAAAGGGUG--CCGgGA--------GCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 55220 0.72 0.566676
Target:  5'- uCAUUcUCCCGCGGCCCaggCGCaGCa-- -3'
miRNA:   3'- -GUAAaAGGGUGCCGGGa--GCGcCGagc -5'
24748 5' -57.3 NC_005264.1 + 56814 0.74 0.46137
Target:  5'- ----gUCCUgcgcugcgcgGCGGCCCUagcuaGCGGCUCGu -3'
miRNA:   3'- guaaaAGGG----------UGCCGGGAg----CGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 59038 0.67 0.842855
Target:  5'- -----cCCCGCGGUCC-CGCcGCUUGu -3'
miRNA:   3'- guaaaaGGGUGCCGGGaGCGcCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 61490 0.67 0.842855
Target:  5'- -----gCCgACGcGCCC-CGCGGuCUCGg -3'
miRNA:   3'- guaaaaGGgUGC-CGGGaGCGCC-GAGC- -5'
24748 5' -57.3 NC_005264.1 + 65594 0.69 0.749493
Target:  5'- -----cCCgGCGGCCaCaucuugcugcugcguUCGCGGCUCGu -3'
miRNA:   3'- guaaaaGGgUGCCGG-G---------------AGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 67948 0.68 0.764555
Target:  5'- ----gUUCC-CGGCgCCU-GCGGCUCGa -3'
miRNA:   3'- guaaaAGGGuGCCG-GGAgCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 73701 0.7 0.643927
Target:  5'- gGUUUUCCCuggcgccaguaccgACGGCCUUgCGCGGguuCUCGu -3'
miRNA:   3'- gUAAAAGGG--------------UGCCGGGA-GCGCC---GAGC- -5'
24748 5' -57.3 NC_005264.1 + 75197 0.68 0.755173
Target:  5'- cCAgg-UCCCGCGcCCCaCGCGGCUg- -3'
miRNA:   3'- -GUaaaAGGGUGCcGGGaGCGCCGAgc -5'
24748 5' -57.3 NC_005264.1 + 79557 0.66 0.873164
Target:  5'- ------aCCGCGGCaaggCCUUGCGGC-CGa -3'
miRNA:   3'- guaaaagGGUGCCG----GGAGCGCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 82178 0.66 0.88641
Target:  5'- ------gCCAUGGCCCUCuugaagaGCGGC-CGu -3'
miRNA:   3'- guaaaagGGUGCCGGGAG-------CGCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 93235 0.66 0.880232
Target:  5'- ---gUUCUCACGccgggcggcGCCCUCGuCGGCgCGu -3'
miRNA:   3'- guaaAAGGGUGC---------CGGGAGC-GCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 97898 0.68 0.755173
Target:  5'- ----aUUCCGCGG-CCUCGCgaaGGCUCu -3'
miRNA:   3'- guaaaAGGGUGCCgGGAGCG---CCGAGc -5'
24748 5' -57.3 NC_005264.1 + 99760 0.69 0.696977
Target:  5'- --cUUUCCgCgACGGCCCUCGcCGaGCUgGa -3'
miRNA:   3'- guaAAAGG-G-UGCCGGGAGC-GC-CGAgC- -5'
24748 5' -57.3 NC_005264.1 + 101042 0.71 0.596625
Target:  5'- gAUg--CCCGCGGCCCgguggaGCuGCUCGa -3'
miRNA:   3'- gUAaaaGGGUGCCGGGag----CGcCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 107711 0.66 0.880232
Target:  5'- aCAg---CgCACGGCggggugucgaacCCUCGUGGCUUGg -3'
miRNA:   3'- -GUaaaaGgGUGCCG------------GGAGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 113031 0.66 0.880232
Target:  5'- --cUUUUCCGCGGCCgCgacugggcCGCGGCg-- -3'
miRNA:   3'- guaAAAGGGUGCCGG-Ga-------GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 118044 0.66 0.873164
Target:  5'- --gUUUgCCGCGGCgaC-CGCGGCgUCGg -3'
miRNA:   3'- guaAAAgGGUGCCGg-GaGCGCCG-AGC- -5'
24748 5' -57.3 NC_005264.1 + 121482 0.72 0.576623
Target:  5'- cCGUUcUUCCcggagCugGGCCUUCGCGGCUg- -3'
miRNA:   3'- -GUAA-AAGG-----GugCCGGGAGCGCCGAgc -5'
24748 5' -57.3 NC_005264.1 + 122043 0.67 0.826563
Target:  5'- -----cCCCGCGGCaa--GCGGCUCc -3'
miRNA:   3'- guaaaaGGGUGCCGggagCGCCGAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.