miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24748 5' -57.3 NC_005264.1 + 1042 0.68 0.791088
Target:  5'- ---aUUCUCGCGGUUCUUGCuccaccgugcggaGGCUCGc -3'
miRNA:   3'- guaaAAGGGUGCCGGGAGCG-------------CCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 2455 0.72 0.576623
Target:  5'- cCGUUcUUCCcggagCugGGCCUUCGCGGCUg- -3'
miRNA:   3'- -GUAA-AAGG-----GugCCGGGAGCGCCGAgc -5'
24748 5' -57.3 NC_005264.1 + 5175 0.71 0.6268
Target:  5'- -----gCCUAUucggaGGCCCUCGCGGC-CGa -3'
miRNA:   3'- guaaaaGGGUG-----CCGGGAGCGCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 5940 0.69 0.72643
Target:  5'- ------aCCACGGCCCgaaccCGCGGCg-- -3'
miRNA:   3'- guaaaagGGUGCCGGGa----GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 17355 0.66 0.880232
Target:  5'- ----cUUCCGCGGCagCUgGCGGCggcgCGg -3'
miRNA:   3'- guaaaAGGGUGCCGg-GAgCGCCGa---GC- -5'
24748 5' -57.3 NC_005264.1 + 24655 0.68 0.754229
Target:  5'- -----cCCCACGGUUCUggccaccUGCGGUUCGa -3'
miRNA:   3'- guaaaaGGGUGCCGGGA-------GCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 25292 0.69 0.696977
Target:  5'- -uUUUUCCCugGGUCCgcgaaGCGGUcuuccUCGa -3'
miRNA:   3'- guAAAAGGGugCCGGGag---CGCCG-----AGC- -5'
24748 5' -57.3 NC_005264.1 + 29768 0.68 0.782969
Target:  5'- ------aCCACaGCUcgCUCGCGGCUCGc -3'
miRNA:   3'- guaaaagGGUGcCGG--GAGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 30224 0.7 0.66705
Target:  5'- aCAUaggUUUCCGCGGCCagCGCGGCaaagCGg -3'
miRNA:   3'- -GUAa--AAGGGUGCCGGgaGCGCCGa---GC- -5'
24748 5' -57.3 NC_005264.1 + 31923 0.97 0.016963
Target:  5'- gCAUUUUCCCACGG-CCUCGCGGCUCGg -3'
miRNA:   3'- -GUAAAAGGGUGCCgGGAGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 32941 0.7 0.687043
Target:  5'- -----cCCCACGGcCCCUCGCaGCa-- -3'
miRNA:   3'- guaaaaGGGUGCC-GGGAGCGcCGagc -5'
24748 5' -57.3 NC_005264.1 + 35146 0.66 0.887086
Target:  5'- ---cUUCCC-CGGCCUggcCGCGGUg-- -3'
miRNA:   3'- guaaAAGGGuGCCGGGa--GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 37478 0.66 0.857647
Target:  5'- ----gUCCCGCGuaucgcacaGCUacgggggCUCGCGGCUCa -3'
miRNA:   3'- guaaaAGGGUGC---------CGG-------GAGCGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 38200 0.73 0.498608
Target:  5'- ----gUCgCGCGGCCCgauaGCGGCUCc -3'
miRNA:   3'- guaaaAGgGUGCCGGGag--CGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 39984 0.67 0.809585
Target:  5'- gUAUUUccUCCUGCGGCCC-CGCccgGGCcCGa -3'
miRNA:   3'- -GUAAA--AGGGUGCCGGGaGCG---CCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 40207 0.69 0.736102
Target:  5'- -----cCUCGCGGCCCccCGCGGCg-- -3'
miRNA:   3'- guaaaaGGGUGCCGGGa-GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 41138 0.68 0.755173
Target:  5'- ------aCCACGcuGCCCUCGCGG-UCGg -3'
miRNA:   3'- guaaaagGGUGC--CGGGAGCGCCgAGC- -5'
24748 5' -57.3 NC_005264.1 + 42911 0.67 0.826563
Target:  5'- -----cCCCGCGGCCCgcgacaCGgGGC-CGu -3'
miRNA:   3'- guaaaaGGGUGCCGGGa-----GCgCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 49327 0.71 0.636876
Target:  5'- ----cUCCCGCGGCUgUUCGC-GCUCGg -3'
miRNA:   3'- guaaaAGGGUGCCGG-GAGCGcCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 49802 0.75 0.375301
Target:  5'- ----aUCgCCGCGGCCCagUCGCGGCcgCGg -3'
miRNA:   3'- guaaaAG-GGUGCCGGG--AGCGCCGa-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.