miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24748 5' -57.3 NC_005264.1 + 150949 1.09 0.002444
Target:  5'- gCAUUUUCCCACGGCCCUCGCGGCUCGg -3'
miRNA:   3'- -GUAAAAGGGUGCCGGGAGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 31923 0.97 0.016963
Target:  5'- gCAUUUUCCCACGG-CCUCGCGGCUCGg -3'
miRNA:   3'- -GUAAAAGGGUGCCgGGAGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 49802 0.75 0.375301
Target:  5'- ----aUCgCCGCGGCCCagUCGCGGCcgCGg -3'
miRNA:   3'- guaaaAG-GGUGCCGGG--AGCGCCGa-GC- -5'
24748 5' -57.3 NC_005264.1 + 56814 0.74 0.46137
Target:  5'- ----gUCCUgcgcugcgcgGCGGCCCUagcuaGCGGCUCGu -3'
miRNA:   3'- guaaaAGGG----------UGCCGGGAg----CGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 38200 0.73 0.498608
Target:  5'- ----gUCgCGCGGCCCgauaGCGGCUCc -3'
miRNA:   3'- guaaaAGgGUGCCGGGag--CGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 157227 0.73 0.498608
Target:  5'- ----gUCgCGCGGCCCgauaGCGGCUCc -3'
miRNA:   3'- guaaaAGgGUGCCGGGag--CGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 146503 0.72 0.546923
Target:  5'- ----cUCCCugGGCCg-CGCGGUUCc -3'
miRNA:   3'- guaaaAGGGugCCGGgaGCGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 55220 0.72 0.566676
Target:  5'- uCAUUcUCCCGCGGCCCaggCGCaGCa-- -3'
miRNA:   3'- -GUAAaAGGGUGCCGGGa--GCGcCGagc -5'
24748 5' -57.3 NC_005264.1 + 2455 0.72 0.576623
Target:  5'- cCGUUcUUCCcggagCugGGCCUUCGCGGCUg- -3'
miRNA:   3'- -GUAA-AAGG-----GugCCGGGAGCGCCGAgc -5'
24748 5' -57.3 NC_005264.1 + 121482 0.72 0.576623
Target:  5'- cCGUUcUUCCcggagCugGGCCUUCGCGGCUg- -3'
miRNA:   3'- -GUAA-AAGG-----GugCCGGGAGCGCCGAgc -5'
24748 5' -57.3 NC_005264.1 + 101042 0.71 0.596625
Target:  5'- gAUg--CCCGCGGCCCgguggaGCuGCUCGa -3'
miRNA:   3'- gUAaaaGGGUGCCGGGag----CGcCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 5175 0.71 0.6268
Target:  5'- -----gCCUAUucggaGGCCCUCGCGGC-CGa -3'
miRNA:   3'- guaaaaGGGUG-----CCGGGAGCGCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 53899 0.71 0.636876
Target:  5'- cCGUUUUUCCACagGGUgCUgaaagccaCGCGGCUCGg -3'
miRNA:   3'- -GUAAAAGGGUG--CCGgGA--------GCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 49327 0.71 0.636876
Target:  5'- ----cUCCCGCGGCUgUUCGC-GCUCGg -3'
miRNA:   3'- guaaaAGGGUGCCGG-GAGCGcCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 73701 0.7 0.643927
Target:  5'- gGUUUUCCCuggcgccaguaccgACGGCCUUgCGCGGguuCUCGu -3'
miRNA:   3'- gUAAAAGGG--------------UGCCGGGA-GCGCC---GAGC- -5'
24748 5' -57.3 NC_005264.1 + 30224 0.7 0.66705
Target:  5'- aCAUaggUUUCCGCGGCCagCGCGGCaaagCGg -3'
miRNA:   3'- -GUAa--AAGGGUGCCGGgaGCGCCGa---GC- -5'
24748 5' -57.3 NC_005264.1 + 129048 0.7 0.677065
Target:  5'- ----gUCCaaaGCGGCgUgCGCGGCUCGa -3'
miRNA:   3'- guaaaAGGg--UGCCGgGaGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 32941 0.7 0.687043
Target:  5'- -----cCCCACGGcCCCUCGCaGCa-- -3'
miRNA:   3'- guaaaaGGGUGCC-GGGAGCGcCGagc -5'
24748 5' -57.3 NC_005264.1 + 151968 0.7 0.687043
Target:  5'- -----cCCCACGGcCCCUCGCaGCa-- -3'
miRNA:   3'- guaaaaGGGUGCC-GGGAGCGcCGagc -5'
24748 5' -57.3 NC_005264.1 + 99760 0.69 0.696977
Target:  5'- --cUUUCCgCgACGGCCCUCGcCGaGCUgGa -3'
miRNA:   3'- guaAAAGG-G-UGCCGGGAGC-GC-CGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.