miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24748 5' -57.3 NC_005264.1 + 61490 0.67 0.842855
Target:  5'- -----gCCgACGcGCCC-CGCGGuCUCGg -3'
miRNA:   3'- guaaaaGGgUGC-CGGGaGCGCC-GAGC- -5'
24748 5' -57.3 NC_005264.1 + 160165 0.68 0.755173
Target:  5'- ------aCCACGcuGCCCUCGCGG-UCGg -3'
miRNA:   3'- guaaaagGGUGC--CGGGAGCGCCgAGC- -5'
24748 5' -57.3 NC_005264.1 + 75197 0.68 0.755173
Target:  5'- cCAgg-UCCCGCGcCCCaCGCGGCUg- -3'
miRNA:   3'- -GUaaaAGGGUGCcGGGaGCGCCGAgc -5'
24748 5' -57.3 NC_005264.1 + 97898 0.68 0.755173
Target:  5'- ----aUUCCGCGG-CCUCGCgaaGGCUCu -3'
miRNA:   3'- guaaaAGGGUGCCgGGAGCG---CCGAGc -5'
24748 5' -57.3 NC_005264.1 + 67948 0.68 0.764555
Target:  5'- ----gUUCC-CGGCgCCU-GCGGCUCGa -3'
miRNA:   3'- guaaaAGGGuGCCG-GGAgCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 1042 0.68 0.791088
Target:  5'- ---aUUCUCGCGGUUCUUGCuccaccgugcggaGGCUCGc -3'
miRNA:   3'- guaaAAGGGUGCCGGGAGCG-------------CCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 147549 0.68 0.791984
Target:  5'- --cUUUCCCGCGGCgCgaaGUGGC-CGc -3'
miRNA:   3'- guaAAAGGGUGCCGgGag-CGCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 159011 0.67 0.809585
Target:  5'- gUAUUUccUCCUGCGGCCC-CGCccgGGCcCGa -3'
miRNA:   3'- -GUAAA--AGGGUGCCGGGaGCG---CCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 59038 0.67 0.842855
Target:  5'- -----cCCCGCGGUCC-CGCcGCUUGu -3'
miRNA:   3'- guaaaaGGGUGCCGGGaGCGcCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 65594 0.69 0.749493
Target:  5'- -----cCCgGCGGCCaCaucuugcugcugcguUCGCGGCUCGu -3'
miRNA:   3'- guaaaaGGgUGCCGG-G---------------AGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 159234 0.69 0.736102
Target:  5'- -----cCUCGCGGCCCccCGCGGCg-- -3'
miRNA:   3'- guaaaaGGGUGCCGGGa-GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 5940 0.69 0.72643
Target:  5'- ------aCCACGGCCCgaaccCGCGGCg-- -3'
miRNA:   3'- guaaaagGGUGCCGGGa----GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 157227 0.73 0.498608
Target:  5'- ----gUCgCGCGGCCCgauaGCGGCUCc -3'
miRNA:   3'- guaaaAGgGUGCCGGGag--CGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 146503 0.72 0.546923
Target:  5'- ----cUCCCugGGCCg-CGCGGUUCc -3'
miRNA:   3'- guaaaAGGGugCCGGgaGCGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 55220 0.72 0.566676
Target:  5'- uCAUUcUCCCGCGGCCCaggCGCaGCa-- -3'
miRNA:   3'- -GUAAaAGGGUGCCGGGa--GCGcCGagc -5'
24748 5' -57.3 NC_005264.1 + 121482 0.72 0.576623
Target:  5'- cCGUUcUUCCcggagCugGGCCUUCGCGGCUg- -3'
miRNA:   3'- -GUAA-AAGG-----GugCCGGGAGCGCCGAgc -5'
24748 5' -57.3 NC_005264.1 + 5175 0.71 0.6268
Target:  5'- -----gCCUAUucggaGGCCCUCGCGGC-CGa -3'
miRNA:   3'- guaaaaGGGUG-----CCGGGAGCGCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 49327 0.71 0.636876
Target:  5'- ----cUCCCGCGGCUgUUCGC-GCUCGg -3'
miRNA:   3'- guaaaAGGGUGCCGG-GAGCGcCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 30224 0.7 0.66705
Target:  5'- aCAUaggUUUCCGCGGCCagCGCGGCaaagCGg -3'
miRNA:   3'- -GUAa--AAGGGUGCCGGgaGCGCCGa---GC- -5'
24748 5' -57.3 NC_005264.1 + 151968 0.7 0.687043
Target:  5'- -----cCCCACGGcCCCUCGCaGCa-- -3'
miRNA:   3'- guaaaaGGGUGCC-GGGAGCGcCGagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.