miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24748 5' -57.3 NC_005264.1 + 107711 0.66 0.880232
Target:  5'- aCAg---CgCACGGCggggugucgaacCCUCGUGGCUUGg -3'
miRNA:   3'- -GUaaaaGgGUGCCG------------GGAGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 40207 0.69 0.736102
Target:  5'- -----cCUCGCGGCCCccCGCGGCg-- -3'
miRNA:   3'- guaaaaGGGUGCCGGGa-GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 25292 0.69 0.696977
Target:  5'- -uUUUUCCCugGGUCCgcgaaGCGGUcuuccUCGa -3'
miRNA:   3'- guAAAAGGGugCCGGGag---CGCCG-----AGC- -5'
24748 5' -57.3 NC_005264.1 + 31923 0.97 0.016963
Target:  5'- gCAUUUUCCCACGG-CCUCGCGGCUCGg -3'
miRNA:   3'- -GUAAAAGGGUGCCgGGAGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 37478 0.66 0.857647
Target:  5'- ----gUCCCGCGuaucgcacaGCUacgggggCUCGCGGCUCa -3'
miRNA:   3'- guaaaAGGGUGC---------CGG-------GAGCGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 137283 0.67 0.842855
Target:  5'- ----aUUCCGCGGCgUUgGCGGCgacgCGg -3'
miRNA:   3'- guaaaAGGGUGCCGgGAgCGCCGa---GC- -5'
24748 5' -57.3 NC_005264.1 + 122043 0.67 0.826563
Target:  5'- -----cCCCGCGGCaa--GCGGCUCc -3'
miRNA:   3'- guaaaaGGGUGCCGggagCGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 146405 0.67 0.809585
Target:  5'- -----aCCCGCgggcaGGCCC-CGCGGCagUCGa -3'
miRNA:   3'- guaaaaGGGUG-----CCGGGaGCGCCG--AGC- -5'
24748 5' -57.3 NC_005264.1 + 29768 0.68 0.782969
Target:  5'- ------aCCACaGCUcgCUCGCGGCUCGc -3'
miRNA:   3'- guaaaagGGUGcCGG--GAGCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 133894 0.69 0.736102
Target:  5'- gCGUUcaCCCACGGCUCguaCGCGGUa-- -3'
miRNA:   3'- -GUAAaaGGGUGCCGGGa--GCGCCGagc -5'
24748 5' -57.3 NC_005264.1 + 41138 0.68 0.755173
Target:  5'- ------aCCACGcuGCCCUCGCGG-UCGg -3'
miRNA:   3'- guaaaagGGUGC--CGGGAGCGCCgAGC- -5'
24748 5' -57.3 NC_005264.1 + 139806 0.68 0.791984
Target:  5'- gCGUg--CCguCGGCCgUCGCGGgaCGa -3'
miRNA:   3'- -GUAaaaGGguGCCGGgAGCGCCgaGC- -5'
24748 5' -57.3 NC_005264.1 + 93235 0.66 0.880232
Target:  5'- ---gUUCUCACGccgggcggcGCCCUCGuCGGCgCGu -3'
miRNA:   3'- guaaAAGGGUGC---------CGGGAGC-GCCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 132076 0.68 0.755173
Target:  5'- ----cUCCggaagaGCGGCCCUCguuuccccugaGCGGCUCu -3'
miRNA:   3'- guaaaAGGg-----UGCCGGGAG-----------CGCCGAGc -5'
24748 5' -57.3 NC_005264.1 + 155934 0.66 0.876017
Target:  5'- -----gCCCACGGaaagCCgcgcgcugggacugCGCGGCUCGc -3'
miRNA:   3'- guaaaaGGGUGCCg---GGa-------------GCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 39984 0.67 0.809585
Target:  5'- gUAUUUccUCCUGCGGCCC-CGCccgGGCcCGa -3'
miRNA:   3'- -GUAAA--AGGGUGCCGGGaGCG---CCGaGC- -5'
24748 5' -57.3 NC_005264.1 + 24655 0.68 0.754229
Target:  5'- -----cCCCACGGUUCUggccaccUGCGGUUCGa -3'
miRNA:   3'- guaaaaGGGUGCCGGGA-------GCGCCGAGC- -5'
24748 5' -57.3 NC_005264.1 + 99760 0.69 0.696977
Target:  5'- --cUUUCCgCgACGGCCCUCGcCGaGCUgGa -3'
miRNA:   3'- guaAAAGG-G-UGCCGGGAGC-GC-CGAgC- -5'
24748 5' -57.3 NC_005264.1 + 149152 0.66 0.865887
Target:  5'- aGUUcUCCCugGGCCaUgGCGGUUa- -3'
miRNA:   3'- gUAAaAGGGugCCGGgAgCGCCGAgc -5'
24748 5' -57.3 NC_005264.1 + 42911 0.67 0.826563
Target:  5'- -----cCCCGCGGCCCgcgacaCGgGGC-CGu -3'
miRNA:   3'- guaaaaGGGUGCCGGGa-----GCgCCGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.