miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24749 5' -53.7 NC_005264.1 + 23931 0.66 0.97144
Target:  5'- ----cGGCGGUUCUggucgCGCCGccGAugGGu -3'
miRNA:   3'- gucuaCCGUCAAGGa----GCGGU--CUugCC- -5'
24749 5' -53.7 NC_005264.1 + 138170 0.66 0.970866
Target:  5'- gAGGUGGCGGcuuccggccugCCUCGCUgcagAGAcaagGCGGc -3'
miRNA:   3'- gUCUACCGUCaa---------GGAGCGG----UCU----UGCC- -5'
24749 5' -53.7 NC_005264.1 + 44885 0.66 0.965328
Target:  5'- gGGA-GGCGGgcccgUCgUCGUCuGGGGCGGg -3'
miRNA:   3'- gUCUaCCGUCa----AGgAGCGG-UCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 25915 0.66 0.965328
Target:  5'- aCAGAUGGCGGgggg-CGCUGuAGCGGa -3'
miRNA:   3'- -GUCUACCGUCaaggaGCGGUcUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 5528 0.67 0.958352
Target:  5'- aCAGcc-GCGGcgUCUCGCgCGGAGCGGg -3'
miRNA:   3'- -GUCuacCGUCaaGGAGCG-GUCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 38358 0.67 0.957979
Target:  5'- gCGGcggGGCGGUuaggaccUCCUCcgGCgAGAGCGGc -3'
miRNA:   3'- -GUCua-CCGUCA-------AGGAG--CGgUCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 157385 0.67 0.957979
Target:  5'- gCGGcggGGCGGUuaggaccUCCUCcgGCgAGAGCGGc -3'
miRNA:   3'- -GUCua-CCGUCA-------AGGAG--CGgUCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 66464 0.67 0.954526
Target:  5'- gAGAUGGCAccgCCgcgGCCAGAcucaaugcuugGCGGg -3'
miRNA:   3'- gUCUACCGUcaaGGag-CGGUCU-----------UGCC- -5'
24749 5' -53.7 NC_005264.1 + 122528 0.67 0.93688
Target:  5'- gCGGggGGCAGgggaUCCUCGCCGuccgccucgucGAACc- -3'
miRNA:   3'- -GUCuaCCGUCa---AGGAGCGGU-----------CUUGcc -5'
24749 5' -53.7 NC_005264.1 + 43950 0.67 0.93688
Target:  5'- -cGGUGGuCAGgcCCUacCGCCcGAACGGu -3'
miRNA:   3'- guCUACC-GUCaaGGA--GCGGuCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 96400 0.67 0.93688
Target:  5'- ---uUGGCGacuGUUCCUCaaGgCAGAACGGa -3'
miRNA:   3'- gucuACCGU---CAAGGAG--CgGUCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 3501 0.67 0.93688
Target:  5'- gCGGggGGCAGgggaUCCUCGCCGuccgccucgucGAACc- -3'
miRNA:   3'- -GUCuaCCGUCa---AGGAGCGGU-----------CUUGcc -5'
24749 5' -53.7 NC_005264.1 + 22060 0.68 0.931869
Target:  5'- uGGAcGGUAGcgCCgcCGCCGGAagGCGGu -3'
miRNA:   3'- gUCUaCCGUCaaGGa-GCGGUCU--UGCC- -5'
24749 5' -53.7 NC_005264.1 + 13502 0.68 0.926616
Target:  5'- gGGAUGGCGGUaaaUCGuCCAacucGAACGGc -3'
miRNA:   3'- gUCUACCGUCAaggAGC-GGU----CUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 76885 0.69 0.902547
Target:  5'- gAGAUGGaCAaUUCUccguacaUUGCCGGGACGGu -3'
miRNA:   3'- gUCUACC-GUcAAGG-------AGCGGUCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 152885 0.69 0.883114
Target:  5'- aCGGGUccGGCAGUcCCUCGCCG--GCGu -3'
miRNA:   3'- -GUCUA--CCGUCAaGGAGCGGUcuUGCc -5'
24749 5' -53.7 NC_005264.1 + 92495 0.69 0.883114
Target:  5'- -cGGUGGCGGUgcgCCUgGCCaucuguGGAuccGCGGa -3'
miRNA:   3'- guCUACCGUCAa--GGAgCGG------UCU---UGCC- -5'
24749 5' -53.7 NC_005264.1 + 33859 0.69 0.883114
Target:  5'- aCGGGUccGGCAGUcCCUCGCCG--GCGu -3'
miRNA:   3'- -GUCUA--CCGUCAaGGAGCGGUcuUGCc -5'
24749 5' -53.7 NC_005264.1 + 126912 0.69 0.875967
Target:  5'- cCAGAUgcGGCgucggaGGUcUCCUCGCCGGAGuacUGGg -3'
miRNA:   3'- -GUCUA--CCG------UCA-AGGAGCGGUCUU---GCC- -5'
24749 5' -53.7 NC_005264.1 + 150798 0.69 0.875967
Target:  5'- gGGAUGGUucgcgGGcgCUUCGCCuaAGGGCGGc -3'
miRNA:   3'- gUCUACCG-----UCaaGGAGCGG--UCUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.