miRNA display CGI


Results 41 - 60 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 5' -51.2 NC_005264.1 + 21202 0.67 0.982108
Target:  5'- cGUCGGCCgcagugguacuuUCGGCcGCGACGGCuuUCCGc -3'
miRNA:   3'- -UAGUUGG------------AGCUGuUGUUGUCG--AGGCc -5'
24752 5' -51.2 NC_005264.1 + 136227 0.67 0.982108
Target:  5'- gGUUAACCUUcAUAGCAGCGGCUUUa- -3'
miRNA:   3'- -UAGUUGGAGcUGUUGUUGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 14648 0.67 0.981268
Target:  5'- cUCAAuucCCUCG-CGGCAACGGCagagaccaugcugCCGGg -3'
miRNA:   3'- uAGUU---GGAGCuGUUGUUGUCGa------------GGCC- -5'
24752 5' -51.2 NC_005264.1 + 98528 0.67 0.979954
Target:  5'- cUCAGUCUUGGCAGCGGCAacgcGCUgUGGg -3'
miRNA:   3'- uAGUUGGAGCUGUUGUUGU----CGAgGCC- -5'
24752 5' -51.2 NC_005264.1 + 30385 0.67 0.979954
Target:  5'- cGUCgcgUCUCGGCGGCGGCGGUcgcgcgCCGGu -3'
miRNA:   3'- -UAGuu-GGAGCUGUUGUUGUCGa-----GGCC- -5'
24752 5' -51.2 NC_005264.1 + 149412 0.67 0.979954
Target:  5'- cGUCgcgUCUCGGCGGCGGCGGUcgcgcgCCGGu -3'
miRNA:   3'- -UAGuu-GGAGCUGUUGUUGUCGa-----GGCC- -5'
24752 5' -51.2 NC_005264.1 + 83443 0.67 0.979954
Target:  5'- -gCGGCCUCGcCAcgcccGCGGCGGUUCUGa -3'
miRNA:   3'- uaGUUGGAGCuGU-----UGUUGUCGAGGCc -5'
24752 5' -51.2 NC_005264.1 + 105466 0.68 0.977613
Target:  5'- cGUCAGguaagacuccCCUCcaGCGACGACGGCgaUCCGGc -3'
miRNA:   3'- -UAGUU----------GGAGc-UGUUGUUGUCG--AGGCC- -5'
24752 5' -51.2 NC_005264.1 + 112900 0.68 0.977613
Target:  5'- --aGGCCUCGuu--CAACGGCUCCa- -3'
miRNA:   3'- uagUUGGAGCuguuGUUGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 86141 0.68 0.975077
Target:  5'- cAUgAGCCUCGuCAcgguggGCGACAGC-CUGGu -3'
miRNA:   3'- -UAgUUGGAGCuGU------UGUUGUCGaGGCC- -5'
24752 5' -51.2 NC_005264.1 + 58417 0.68 0.972337
Target:  5'- uUCGACaUCGGCGGCuucCAGCUCUGc -3'
miRNA:   3'- uAGUUGgAGCUGUUGuu-GUCGAGGCc -5'
24752 5' -51.2 NC_005264.1 + 3001 0.68 0.969386
Target:  5'- -cCGACUgggcCGGCGGCu-CGGCUCUGGg -3'
miRNA:   3'- uaGUUGGa---GCUGUUGuuGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 122039 0.68 0.969386
Target:  5'- -gCGACCccgCGGCAA--GCGGCUCCGc -3'
miRNA:   3'- uaGUUGGa--GCUGUUguUGUCGAGGCc -5'
24752 5' -51.2 NC_005264.1 + 58130 0.68 0.969386
Target:  5'- -gCGACCUCGcGCAGCcgucuGguGCUCCGu -3'
miRNA:   3'- uaGUUGGAGC-UGUUGu----UguCGAGGCc -5'
24752 5' -51.2 NC_005264.1 + 31933 0.68 0.966218
Target:  5'- -aCGGCCUCG-CGGCu-CGGCUCUGa -3'
miRNA:   3'- uaGUUGGAGCuGUUGuuGUCGAGGCc -5'
24752 5' -51.2 NC_005264.1 + 128077 0.68 0.966218
Target:  5'- cUCAuCUUCGuguaGCGACAGCGGCgaCCGGc -3'
miRNA:   3'- uAGUuGGAGC----UGUUGUUGUCGa-GGCC- -5'
24752 5' -51.2 NC_005264.1 + 635 0.68 0.966218
Target:  5'- --aGGCgaCGAUAACGACAGCgaCCGGc -3'
miRNA:   3'- uagUUGgaGCUGUUGUUGUCGa-GGCC- -5'
24752 5' -51.2 NC_005264.1 + 80409 0.69 0.964209
Target:  5'- uUCuACCgCGACGACAGCuGCugcccccgccagcucUCCGGg -3'
miRNA:   3'- uAGuUGGaGCUGUUGUUGuCG---------------AGGCC- -5'
24752 5' -51.2 NC_005264.1 + 57491 0.69 0.962825
Target:  5'- ---cACCUCGuGCAGCAGCcGC-CCGGu -3'
miRNA:   3'- uaguUGGAGC-UGUUGUUGuCGaGGCC- -5'
24752 5' -51.2 NC_005264.1 + 68377 0.69 0.962473
Target:  5'- -aCGACCUCGgugaagaGCAACGACucGCUCUGcGg -3'
miRNA:   3'- uaGUUGGAGC-------UGUUGUUGu-CGAGGC-C- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.