Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24753 | 3' | -59.4 | NC_005264.1 | + | 121411 | 0.69 | 0.65559 |
Target: 5'- gCCGUCGCCCGCaggagcccGGCGCCg------ -3' miRNA: 3'- gGGCAGCGGGUGc-------CCGCGGaacaacc -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 53247 | 0.7 | 0.5872 |
Target: 5'- uUCCGUgC-CCCGCGGGCGCg-UGUcUGGc -3' miRNA: 3'- -GGGCA-GcGGGUGCCCGCGgaACA-ACC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 98429 | 0.7 | 0.596932 |
Target: 5'- gCCGU-GCCCGCGGcGUcgGCCUUGgccGGg -3' miRNA: 3'- gGGCAgCGGGUGCC-CG--CGGAACaa-CC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 75717 | 0.7 | 0.5872 |
Target: 5'- aCUGgugCGcCCCGCGGGCGCCggaggccaGUcUGGg -3' miRNA: 3'- gGGCa--GC-GGGUGCCCGCGGaa------CA-ACC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 105907 | 0.71 | 0.548629 |
Target: 5'- aCCCGUCGCCC-CGuGCGCCa------ -3' miRNA: 3'- -GGGCAGCGGGuGCcCGCGGaacaacc -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 59786 | 0.72 | 0.500691 |
Target: 5'- aCUCGUCGCCCGCaggGGGCGCguagcgcaccaugCUUGccGGu -3' miRNA: 3'- -GGGCAGCGGGUG---CCCGCG-------------GAACaaCC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 159561 | 0.74 | 0.381105 |
Target: 5'- cCCCGUCGCCCagggACGuGGCGCUgcGgcuccUGGa -3' miRNA: 3'- -GGGCAGCGGG----UGC-CCGCGGaaCa----ACC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 40534 | 0.74 | 0.381105 |
Target: 5'- cCCCGUCGCCCagggACGuGGCGCUgcGgcuccUGGa -3' miRNA: 3'- -GGGCAGCGGG----UGC-CCGCGGaaCa----ACC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 82444 | 0.75 | 0.342988 |
Target: 5'- uUCGUCGCUUggGGGgGCCUcGUUGGg -3' miRNA: 3'- gGGCAGCGGGugCCCgCGGAaCAACC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 92152 | 0.75 | 0.335701 |
Target: 5'- gCUGUCGCCCGCGGGCguaaaaauuGCCUgccGgcGGc -3' miRNA: 3'- gGGCAGCGGGUGCCCG---------CGGAa--CaaCC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 154553 | 1.11 | 0.001451 |
Target: 5'- cCCCGUCGCCCACGGGCGCCUUGUUGGc -3' miRNA: 3'- -GGGCAGCGGGUGCCCGCGGAACAACC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 35526 | 1.11 | 0.001451 |
Target: 5'- cCCCGUCGCCCACGGGCGCCUUGUUGGc -3' miRNA: 3'- -GGGCAGCGGGUGCCCGCGGAACAACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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