Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24753 | 3' | -59.4 | NC_005264.1 | + | 105907 | 0.71 | 0.548629 |
Target: 5'- aCCCGUCGCCC-CGuGCGCCa------ -3' miRNA: 3'- -GGGCAGCGGGuGCcCGCGGaacaacc -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 120096 | 0.66 | 0.827568 |
Target: 5'- gUCGU-GCCCAcCGGGUGCCgcgcagaagUGGg -3' miRNA: 3'- gGGCAgCGGGU-GCCCGCGGaaca-----ACC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 121411 | 0.69 | 0.65559 |
Target: 5'- gCCGUCGCCCGCaggagcccGGCGCCg------ -3' miRNA: 3'- gGGCAGCGGGUGc-------CCGCGGaacaacc -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 141302 | 0.67 | 0.751132 |
Target: 5'- gCCGUCGCCCACGaaGCGUCa------ -3' miRNA: 3'- gGGCAGCGGGUGCc-CGCGGaacaacc -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 141508 | 0.68 | 0.723109 |
Target: 5'- cCCCGgCGCauCUACGGGCGCCa------ -3' miRNA: 3'- -GGGCaGCG--GGUGCCCGCGGaacaacc -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 148949 | 0.66 | 0.821065 |
Target: 5'- cCCCGUCGCCUGCaGGCGacgaCgcGUagagcaggucgUGGg -3' miRNA: 3'- -GGGCAGCGGGUGcCCGCg---GaaCA-----------ACC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 150493 | 0.66 | 0.837126 |
Target: 5'- -gCGUCGCCgAUGGGCGUg--GaUGGu -3' miRNA: 3'- ggGCAGCGGgUGCCCGCGgaaCaACC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 154553 | 1.11 | 0.001451 |
Target: 5'- cCCCGUCGCCCACGGGCGCCUUGUUGGc -3' miRNA: 3'- -GGGCAGCGGGUGCCCGCGGAACAACC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 154826 | 0.69 | 0.645815 |
Target: 5'- gCCGUCG-UgGCGGGCGCCUcUGccGGc -3' miRNA: 3'- gGGCAGCgGgUGCCCGCGGA-ACaaCC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 159561 | 0.74 | 0.381105 |
Target: 5'- cCCCGUCGCCCagggACGuGGCGCUgcGgcuccUGGa -3' miRNA: 3'- -GGGCAGCGGG----UGC-CCGCGGaaCa----ACC- -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 159672 | 0.66 | 0.812796 |
Target: 5'- gCCGUCGCgCGCggaGGGuCGCCguuucgGUUGc -3' miRNA: 3'- gGGCAGCGgGUG---CCC-GCGGaa----CAACc -5' |
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24753 | 3' | -59.4 | NC_005264.1 | + | 160640 | 0.69 | 0.665348 |
Target: 5'- aCCCuuagCGCgCAUGGGCGCCggcaaUGgaGGg -3' miRNA: 3'- -GGGca--GCGgGUGCCCGCGGa----ACaaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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