miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24753 5' -57.8 NC_005264.1 + 154587 1.08 0.002207
Target:  5'- gAACCAACACGCCAGCGAAGAGGGGGGa -3'
miRNA:   3'- -UUGGUUGUGCGGUCGCUUCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 35560 1.08 0.002207
Target:  5'- gAACCAACACGCCAGCGAAGAGGGGGGa -3'
miRNA:   3'- -UUGGUUGUGCGGUCGCUUCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 43193 0.85 0.086372
Target:  5'- uGCCugcGACGCggGCCGGCGggGGGGGGGGg -3'
miRNA:   3'- uUGG---UUGUG--CGGUCGCuuCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 162220 0.85 0.086372
Target:  5'- uGCCugcGACGCggGCCGGCGggGGGGGGGGg -3'
miRNA:   3'- uUGG---UUGUG--CGGUCGCuuCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 92529 0.8 0.168553
Target:  5'- -gUCAGCGCGCCGGCGGggaacaagauGGAGuGGGGGa -3'
miRNA:   3'- uuGGUUGUGCGGUCGCU----------UCUC-CCCCC- -5'
24753 5' -57.8 NC_005264.1 + 162167 0.75 0.343632
Target:  5'- cACCuaAGCACGgguggAGCGggGAGGGGGGg -3'
miRNA:   3'- uUGG--UUGUGCgg---UCGCuuCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 43140 0.75 0.343632
Target:  5'- cACCuaAGCACGgguggAGCGggGAGGGGGGg -3'
miRNA:   3'- uUGG--UUGUGCgg---UCGCuuCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 47250 0.75 0.374976
Target:  5'- aGGCCAACAaguuCCu-CGAAGAGGGGGGg -3'
miRNA:   3'- -UUGGUUGUgc--GGucGCUUCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 43440 0.72 0.489218
Target:  5'- gGACgCGAC-CGCCAG---AGAGGGGGGa -3'
miRNA:   3'- -UUG-GUUGuGCGGUCgcuUCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 162467 0.72 0.489218
Target:  5'- gGACgCGAC-CGCCAG---AGAGGGGGGa -3'
miRNA:   3'- -UUG-GUUGuGCGGUCgcuUCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 55538 0.71 0.537351
Target:  5'- -uCCAGCugG-UGGCGAcggaaguacuGGAGGGGGGa -3'
miRNA:   3'- uuGGUUGugCgGUCGCU----------UCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 104633 0.71 0.547182
Target:  5'- cAACCAGCGCGCgCGGgGAacacuaaaauagAGAGGGcuucGGGg -3'
miRNA:   3'- -UUGGUUGUGCG-GUCgCU------------UCUCCC----CCC- -5'
24753 5' -57.8 NC_005264.1 + 81793 0.71 0.576992
Target:  5'- aAACC-ACGCGCCAGUGAGGGuagacGGcGGGu -3'
miRNA:   3'- -UUGGuUGUGCGGUCGCUUCU-----CC-CCCc -5'
24753 5' -57.8 NC_005264.1 + 56522 0.7 0.617242
Target:  5'- cAUCGGCGCGCCGGCGGcacAGGugauggugccGGcGGGGa -3'
miRNA:   3'- uUGGUUGUGCGGUCGCU---UCU----------CC-CCCC- -5'
24753 5' -57.8 NC_005264.1 + 49569 0.7 0.621285
Target:  5'- cGACCGcuucaccuucucggcGCACGCCgccGGCGAccaGGAcgacGGGGGGc -3'
miRNA:   3'- -UUGGU---------------UGUGCGG---UCGCU---UCU----CCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 64512 0.69 0.655646
Target:  5'- gGACCGcgcuguucugucCGCGCCGcCGcGGAGGGGGGu -3'
miRNA:   3'- -UUGGUu-----------GUGCGGUcGCuUCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 161836 0.69 0.657664
Target:  5'- aAACCggUuccCGCCGGUccgcGAGGGGGGa -3'
miRNA:   3'- -UUGGuuGu--GCGGUCGcuu-CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 42810 0.69 0.657664
Target:  5'- aAACCggUuccCGCCGGUccgcGAGGGGGGa -3'
miRNA:   3'- -UUGGuuGu--GCGGUCGcuu-CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 35948 0.69 0.676783
Target:  5'- aGACCuguuuCGCGCCgacgauGGCGAuucgccuGGAGGGGGc -3'
miRNA:   3'- -UUGGuu---GUGCGG------UCGCU-------UCUCCCCCc -5'
24753 5' -57.8 NC_005264.1 + 2882 0.69 0.697762
Target:  5'- cGACCGGgGCGCggcgCGGCGggGAGGGcGa -3'
miRNA:   3'- -UUGGUUgUGCG----GUCGCuuCUCCCcCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.