miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24753 5' -57.8 NC_005264.1 + 808 0.66 0.851806
Target:  5'- -cCCGAgACcCCGGgGGggggguuaAGGGGGGGGg -3'
miRNA:   3'- uuGGUUgUGcGGUCgCU--------UCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 1001 0.68 0.717524
Target:  5'- uGCCc-CGCGCCcGUGuGGuGGGGGGg -3'
miRNA:   3'- uUGGuuGUGCGGuCGCuUCuCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 2882 0.69 0.697762
Target:  5'- cGACCGGgGCGCggcgCGGCGggGAGGGcGa -3'
miRNA:   3'- -UUGGUUgUGCG----GUCGCuuCUCCCcCc -5'
24753 5' -57.8 NC_005264.1 + 3487 0.68 0.727302
Target:  5'- uGCCGccGCACG-CGGCGggGGGcaGGGGa -3'
miRNA:   3'- uUGGU--UGUGCgGUCGCuuCUCc-CCCC- -5'
24753 5' -57.8 NC_005264.1 + 4513 0.68 0.737
Target:  5'- gGACUGG-GCGUCcGCGGAGGGGGaGGGg -3'
miRNA:   3'- -UUGGUUgUGCGGuCGCUUCUCCC-CCC- -5'
24753 5' -57.8 NC_005264.1 + 5078 0.68 0.746608
Target:  5'- cGGCCAGCcCGuCCGGgGAGGGGuccucuacgccuGGGGGc -3'
miRNA:   3'- -UUGGUUGuGC-GGUCgCUUCUC------------CCCCC- -5'
24753 5' -57.8 NC_005264.1 + 8283 0.66 0.843933
Target:  5'- cGCCAACaagGCGCCcGUGGGcGAcGGGGGc -3'
miRNA:   3'- uUGGUUG---UGCGGuCGCUU-CUcCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 12536 0.66 0.847105
Target:  5'- uAGCCggUAggagcggggggcguuCGCC-GCGAAgauaccgcuGAGGGGGGa -3'
miRNA:   3'- -UUGGuuGU---------------GCGGuCGCUU---------CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 13443 0.66 0.826797
Target:  5'- aGACgCGACGCGgCGGCGccgAAGGGGcuccugcGGGGa -3'
miRNA:   3'- -UUG-GUUGUGCgGUCGC---UUCUCC-------CCCC- -5'
24753 5' -57.8 NC_005264.1 + 31178 0.67 0.783976
Target:  5'- gGGCCGGaGgGCgAGCGAgugGGAcGGGGGGc -3'
miRNA:   3'- -UUGGUUgUgCGgUCGCU---UCU-CCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 35560 1.08 0.002207
Target:  5'- gAACCAACACGCCAGCGAAGAGGGGGGa -3'
miRNA:   3'- -UUGGUUGUGCGGUCGCUUCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 35761 0.68 0.737
Target:  5'- cGGCCGcgACGUgGGUGAAGAGGcGGaGGg -3'
miRNA:   3'- -UUGGUugUGCGgUCGCUUCUCC-CC-CC- -5'
24753 5' -57.8 NC_005264.1 + 35948 0.69 0.676783
Target:  5'- aGACCuguuuCGCGCCgacgauGGCGAuucgccuGGAGGGGGc -3'
miRNA:   3'- -UUGGuu---GUGCGG------UCGCU-------UCUCCCCCc -5'
24753 5' -57.8 NC_005264.1 + 36222 0.67 0.810634
Target:  5'- aGACCAGa--GCCcGCGAGGuuuAGGGGcGGa -3'
miRNA:   3'- -UUGGUUgugCGGuCGCUUC---UCCCC-CC- -5'
24753 5' -57.8 NC_005264.1 + 39219 0.69 0.707674
Target:  5'- cGCCGcgGCGCUGGCGggGAGGGc-- -3'
miRNA:   3'- uUGGUugUGCGGUCGCuuCUCCCccc -5'
24753 5' -57.8 NC_005264.1 + 42810 0.69 0.657664
Target:  5'- aAACCggUuccCGCCGGUccgcGAGGGGGGa -3'
miRNA:   3'- -UUGGuuGu--GCGGUCGcuu-CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 43140 0.75 0.343632
Target:  5'- cACCuaAGCACGgguggAGCGggGAGGGGGGg -3'
miRNA:   3'- uUGG--UUGUGCgg---UCGCuuCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 43193 0.85 0.086372
Target:  5'- uGCCugcGACGCggGCCGGCGggGGGGGGGGg -3'
miRNA:   3'- uUGG---UUGUG--CGGUCGCuuCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 43440 0.72 0.489218
Target:  5'- gGACgCGAC-CGCCAG---AGAGGGGGGa -3'
miRNA:   3'- -UUG-GUUGuGCGGUCgcuUCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 47250 0.75 0.374976
Target:  5'- aGGCCAACAaguuCCu-CGAAGAGGGGGGg -3'
miRNA:   3'- -UUGGUUGUgc--GGucGCUUCUCCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.