miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24753 5' -57.8 NC_005264.1 + 49569 0.7 0.621285
Target:  5'- cGACCGcuucaccuucucggcGCACGCCgccGGCGAccaGGAcgacGGGGGGc -3'
miRNA:   3'- -UUGGU---------------UGUGCGG---UCGCU---UCU----CCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 55538 0.71 0.537351
Target:  5'- -uCCAGCugG-UGGCGAcggaaguacuGGAGGGGGGa -3'
miRNA:   3'- uuGGUUGugCgGUCGCU----------UCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 56522 0.7 0.617242
Target:  5'- cAUCGGCGCGCCGGCGGcacAGGugauggugccGGcGGGGa -3'
miRNA:   3'- uUGGUUGUGCGGUCGCU---UCU----------CC-CCCC- -5'
24753 5' -57.8 NC_005264.1 + 64512 0.69 0.655646
Target:  5'- gGACCGcgcuguucugucCGCGCCGcCGcGGAGGGGGGu -3'
miRNA:   3'- -UUGGUu-----------GUGCGGUcGCuUCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 67341 0.66 0.851806
Target:  5'- cGAUC-GC-CGCC-GCGAAGAGGGcGGa -3'
miRNA:   3'- -UUGGuUGuGCGGuCGCUUCUCCC-CCc -5'
24753 5' -57.8 NC_005264.1 + 81793 0.71 0.576992
Target:  5'- aAACC-ACGCGCCAGUGAGGGuagacGGcGGGu -3'
miRNA:   3'- -UUGGuUGUGCGGUCGCUUCU-----CC-CCCc -5'
24753 5' -57.8 NC_005264.1 + 90151 0.69 0.697762
Target:  5'- gGACCug-ACGCaGGCGAucAGGGGGGg -3'
miRNA:   3'- -UUGGuugUGCGgUCGCUucUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 92529 0.8 0.168553
Target:  5'- -gUCAGCGCGCCGGCGGggaacaagauGGAGuGGGGGa -3'
miRNA:   3'- uuGGUUGUGCGGUCGCU----------UCUC-CCCCC- -5'
24753 5' -57.8 NC_005264.1 + 100867 0.66 0.827631
Target:  5'- gGACCAgGCGCGCgA-CGAGGGGGaaugcuacGGGGg -3'
miRNA:   3'- -UUGGU-UGUGCGgUcGCUUCUCC--------CCCC- -5'
24753 5' -57.8 NC_005264.1 + 104633 0.71 0.547182
Target:  5'- cAACCAGCGCGCgCGGgGAacacuaaaauagAGAGGGcuucGGGg -3'
miRNA:   3'- -UUGGUUGUGCG-GUCgCU------------UCUCCC----CCC- -5'
24753 5' -57.8 NC_005264.1 + 118610 0.67 0.774812
Target:  5'- cGACUucgcCGCGCuugaaggggaaCAGCucuGggGAGGGGGGg -3'
miRNA:   3'- -UUGGuu--GUGCG-----------GUCG---CuuCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 119834 0.66 0.851806
Target:  5'- -cCCGAgACcCCGGgGGggggguuaAGGGGGGGGg -3'
miRNA:   3'- uuGGUUgUGcGGUCgCU--------UCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 121908 0.69 0.697762
Target:  5'- cGACCGGgGCGCggcgCGGCGggGAGGGcGa -3'
miRNA:   3'- -UUGGUUgUGCG----GUCGCuuCUCCCcCc -5'
24753 5' -57.8 NC_005264.1 + 122514 0.68 0.727302
Target:  5'- uGCCGccGCACG-CGGCGggGGGcaGGGGa -3'
miRNA:   3'- uUGGU--UGUGCgGUCGCuuCUCc-CCCC- -5'
24753 5' -57.8 NC_005264.1 + 123540 0.68 0.737
Target:  5'- gGACUGG-GCGUCcGCGGAGGGGGaGGGg -3'
miRNA:   3'- -UUGGUUgUGCGGuCGCUUCUCCC-CCC- -5'
24753 5' -57.8 NC_005264.1 + 124105 0.68 0.746608
Target:  5'- cGGCCAGCcCGuCCGGgGAGGGGuccucuacgccuGGGGGc -3'
miRNA:   3'- -UUGGUUGuGC-GGUCgCUUCUC------------CCCCC- -5'
24753 5' -57.8 NC_005264.1 + 126625 0.66 0.859485
Target:  5'- cAGCCcagaaAACGCGUCgAGCaccucGGGGGGGGa -3'
miRNA:   3'- -UUGG-----UUGUGCGG-UCGcuu--CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 127310 0.66 0.843933
Target:  5'- cGCCAACaagGCGCCcGUGGGcGAcGGGGGc -3'
miRNA:   3'- uUGGUUG---UGCGGuCGCUU-CUcCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 131563 0.66 0.847105
Target:  5'- uAGCCggUAggagcggggggcguuCGCC-GCGAAgauaccgcuGAGGGGGGa -3'
miRNA:   3'- -UUGGuuGU---------------GCGGuCGCUU---------CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 132470 0.66 0.826797
Target:  5'- aGACgCGACGCGgCGGCGccgAAGGGGcuccugcGGGGa -3'
miRNA:   3'- -UUG-GUUGUGCgGUCGC---UUCUCC-------CCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.