miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24753 5' -57.8 NC_005264.1 + 162467 0.72 0.489218
Target:  5'- gGACgCGAC-CGCCAG---AGAGGGGGGa -3'
miRNA:   3'- -UUG-GUUGuGCGGUCgcuUCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 162220 0.85 0.086372
Target:  5'- uGCCugcGACGCggGCCGGCGggGGGGGGGGg -3'
miRNA:   3'- uUGG---UUGUG--CGGUCGCuuCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 162167 0.75 0.343632
Target:  5'- cACCuaAGCACGgguggAGCGggGAGGGGGGg -3'
miRNA:   3'- uUGG--UUGUGCgg---UCGCuuCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 161836 0.69 0.657664
Target:  5'- aAACCggUuccCGCCGGUccgcGAGGGGGGa -3'
miRNA:   3'- -UUGGuuGu--GCGGUCGcuu-CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 160523 0.67 0.810634
Target:  5'- -uCCuuACGCGCC-GCu--GGGGGGGGa -3'
miRNA:   3'- uuGGu-UGUGCGGuCGcuuCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 158246 0.69 0.707674
Target:  5'- cGCCGcgGCGCUGGCGggGAGGGc-- -3'
miRNA:   3'- uUGGUugUGCGGUCGCuuCUCCCccc -5'
24753 5' -57.8 NC_005264.1 + 155249 0.67 0.810634
Target:  5'- aGACCAGa--GCCcGCGAGGuuuAGGGGcGGa -3'
miRNA:   3'- -UUGGUUgugCGGuCGCUUC---UCCCC-CC- -5'
24753 5' -57.8 NC_005264.1 + 154787 0.68 0.737
Target:  5'- cGGCCGcgACGUgGGUGAAGAGGcGGaGGg -3'
miRNA:   3'- -UUGGUugUGCGgUCGCUUCUCC-CC-CC- -5'
24753 5' -57.8 NC_005264.1 + 154587 1.08 0.002207
Target:  5'- gAACCAACACGCCAGCGAAGAGGGGGGa -3'
miRNA:   3'- -UUGGUUGUGCGGUCGCUUCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 153230 0.66 0.843933
Target:  5'- cAGCCAcguuACGgaGCCuucGGCGcauGGGGGGGGa -3'
miRNA:   3'- -UUGGU----UGUg-CGG---UCGCuu-CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 151848 0.69 0.707674
Target:  5'- gGGCCGcCGCuCCGGCGgcGAcacguGGGGGGc -3'
miRNA:   3'- -UUGGUuGUGcGGUCGCuuCU-----CCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 150205 0.67 0.783976
Target:  5'- gGGCCGGaGgGCgAGCGAgugGGAcGGGGGGc -3'
miRNA:   3'- -UUGGUUgUgCGgUCGCU---UCU-CCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 149570 0.66 0.851806
Target:  5'- cGCgGACA-GCCccgGGCGGAGGGGGGc- -3'
miRNA:   3'- uUGgUUGUgCGG---UCGCUUCUCCCCcc -5'
24753 5' -57.8 NC_005264.1 + 144294 0.67 0.793006
Target:  5'- -uCCGACugACGCCGGCGcgcccucAGGGGGa -3'
miRNA:   3'- uuGGUUG--UGCGGUCGCuuc----UCCCCCc -5'
24753 5' -57.8 NC_005264.1 + 132470 0.66 0.826797
Target:  5'- aGACgCGACGCGgCGGCGccgAAGGGGcuccugcGGGGa -3'
miRNA:   3'- -UUG-GUUGUGCgGUCGC---UUCUCC-------CCCC- -5'
24753 5' -57.8 NC_005264.1 + 131563 0.66 0.847105
Target:  5'- uAGCCggUAggagcggggggcguuCGCC-GCGAAgauaccgcuGAGGGGGGa -3'
miRNA:   3'- -UUGGuuGU---------------GCGGuCGCUU---------CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 127310 0.66 0.843933
Target:  5'- cGCCAACaagGCGCCcGUGGGcGAcGGGGGc -3'
miRNA:   3'- uUGGUUG---UGCGGuCGCUU-CUcCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 126625 0.66 0.859485
Target:  5'- cAGCCcagaaAACGCGUCgAGCaccucGGGGGGGGa -3'
miRNA:   3'- -UUGG-----UUGUGCGG-UCGcuu--CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 124105 0.68 0.746608
Target:  5'- cGGCCAGCcCGuCCGGgGAGGGGuccucuacgccuGGGGGc -3'
miRNA:   3'- -UUGGUUGuGC-GGUCgCUUCUC------------CCCCC- -5'
24753 5' -57.8 NC_005264.1 + 123540 0.68 0.737
Target:  5'- gGACUGG-GCGUCcGCGGAGGGGGaGGGg -3'
miRNA:   3'- -UUGGUUgUGCGGuCGCUUCUCCC-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.