miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24753 5' -57.8 NC_005264.1 + 124105 0.68 0.746608
Target:  5'- cGGCCAGCcCGuCCGGgGAGGGGuccucuacgccuGGGGGc -3'
miRNA:   3'- -UUGGUUGuGC-GGUCgCUUCUC------------CCCCC- -5'
24753 5' -57.8 NC_005264.1 + 5078 0.68 0.746608
Target:  5'- cGGCCAGCcCGuCCGGgGAGGGGuccucuacgccuGGGGGc -3'
miRNA:   3'- -UUGGUUGuGC-GGUCgCUUCUC------------CCCCC- -5'
24753 5' -57.8 NC_005264.1 + 154787 0.68 0.737
Target:  5'- cGGCCGcgACGUgGGUGAAGAGGcGGaGGg -3'
miRNA:   3'- -UUGGUugUGCGgUCGCUUCUCC-CC-CC- -5'
24753 5' -57.8 NC_005264.1 + 35761 0.68 0.737
Target:  5'- cGGCCGcgACGUgGGUGAAGAGGcGGaGGg -3'
miRNA:   3'- -UUGGUugUGCGgUCGCUUCUCC-CC-CC- -5'
24753 5' -57.8 NC_005264.1 + 4513 0.68 0.737
Target:  5'- gGACUGG-GCGUCcGCGGAGGGGGaGGGg -3'
miRNA:   3'- -UUGGUUgUGCGGuCGCUUCUCCC-CCC- -5'
24753 5' -57.8 NC_005264.1 + 123540 0.68 0.737
Target:  5'- gGACUGG-GCGUCcGCGGAGGGGGaGGGg -3'
miRNA:   3'- -UUGGUUgUGCGGuCGCUUCUCCC-CCC- -5'
24753 5' -57.8 NC_005264.1 + 3487 0.68 0.727302
Target:  5'- uGCCGccGCACG-CGGCGggGGGcaGGGGa -3'
miRNA:   3'- uUGGU--UGUGCgGUCGCuuCUCc-CCCC- -5'
24753 5' -57.8 NC_005264.1 + 122514 0.68 0.727302
Target:  5'- uGCCGccGCACG-CGGCGggGGGcaGGGGa -3'
miRNA:   3'- uUGGU--UGUGCgGUCGCuuCUCc-CCCC- -5'
24753 5' -57.8 NC_005264.1 + 1001 0.68 0.717524
Target:  5'- uGCCc-CGCGCCcGUGuGGuGGGGGGg -3'
miRNA:   3'- uUGGuuGUGCGGuCGCuUCuCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 39219 0.69 0.707674
Target:  5'- cGCCGcgGCGCUGGCGggGAGGGc-- -3'
miRNA:   3'- uUGGUugUGCGGUCGCuuCUCCCccc -5'
24753 5' -57.8 NC_005264.1 + 158246 0.69 0.707674
Target:  5'- cGCCGcgGCGCUGGCGggGAGGGc-- -3'
miRNA:   3'- uUGGUugUGCGGUCGCuuCUCCCccc -5'
24753 5' -57.8 NC_005264.1 + 151848 0.69 0.707674
Target:  5'- gGGCCGcCGCuCCGGCGgcGAcacguGGGGGGc -3'
miRNA:   3'- -UUGGUuGUGcGGUCGCuuCU-----CCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 90151 0.69 0.697762
Target:  5'- gGACCug-ACGCaGGCGAucAGGGGGGg -3'
miRNA:   3'- -UUGGuugUGCGgUCGCUucUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 2882 0.69 0.697762
Target:  5'- cGACCGGgGCGCggcgCGGCGggGAGGGcGa -3'
miRNA:   3'- -UUGGUUgUGCG----GUCGCuuCUCCCcCc -5'
24753 5' -57.8 NC_005264.1 + 121908 0.69 0.697762
Target:  5'- cGACCGGgGCGCggcgCGGCGggGAGGGcGa -3'
miRNA:   3'- -UUGGUUgUGCG----GUCGCuuCUCCCcCc -5'
24753 5' -57.8 NC_005264.1 + 35948 0.69 0.676783
Target:  5'- aGACCuguuuCGCGCCgacgauGGCGAuucgccuGGAGGGGGc -3'
miRNA:   3'- -UUGGuu---GUGCGG------UCGCU-------UCUCCCCCc -5'
24753 5' -57.8 NC_005264.1 + 42810 0.69 0.657664
Target:  5'- aAACCggUuccCGCCGGUccgcGAGGGGGGa -3'
miRNA:   3'- -UUGGuuGu--GCGGUCGcuu-CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 161836 0.69 0.657664
Target:  5'- aAACCggUuccCGCCGGUccgcGAGGGGGGa -3'
miRNA:   3'- -UUGGuuGu--GCGGUCGcuu-CUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 64512 0.69 0.655646
Target:  5'- gGACCGcgcuguucugucCGCGCCGcCGcGGAGGGGGGu -3'
miRNA:   3'- -UUGGUu-----------GUGCGGUcGCuUCUCCCCCC- -5'
24753 5' -57.8 NC_005264.1 + 49569 0.7 0.621285
Target:  5'- cGACCGcuucaccuucucggcGCACGCCgccGGCGAccaGGAcgacGGGGGGc -3'
miRNA:   3'- -UUGGU---------------UGUGCGG---UCGCU---UCU----CCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.